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PI0006621 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006621
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description40S ribosomal protein S4
Genome locationchr10:14108609..14108962
RNA-Seq ExpressionPI0006621
SyntenyPI0006621
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000876 - Ribosomal protein S4e
IPR013843 - Ribosomal protein S4e, N-terminal
IPR018199 - Ribosomal protein S4e, N-terminal, conserved site
IPR036986 - RNA-binding S4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8397219.1 hypothetical protein HHK36_016127 [Tetracentron sinense]7.6e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

KCW60003.1 hypothetical protein EUGRSUZ_H02737 [Eucalyptus grandis]7.6e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

TKY63550.1 40S ribosomal protein S4 [Spatholobus suberectus]7.6e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

XP_017428020.1 PREDICTED: 40S ribosomal protein S4-1 [Vigna angularis]7.6e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

XP_028786378.1 40S ribosomal protein S4-3 [Prosopis alba]7.6e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

TrEMBL top hitse value%identityAlignment
A0A0B2SPL7 40S ribosomal protein S43.7e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

A0A444XRT3 40S ribosomal protein S43.7e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

A0A445M2K0 40S ribosomal protein S43.7e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

A0A6A5MZZ9 40S ribosomal protein S43.7e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

A0A6I9TMQ7 40S ribosomal protein S43.7e-28100Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

SwissProt top hitse value%identityAlignment
O22424 40S ribosomal protein S43.8e-3096.88Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

O81363 40S ribosomal protein S42.9e-3096.88Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

P46299 40S ribosomal protein S42.2e-3098.44Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

P49398 40S ribosomal protein S43.8e-3096.88Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

Q93VH9 40S ribosomal protein S4-14.9e-3095.31Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

Arabidopsis top hitse value%identityAlignment
AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein3.5e-3195.31Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

AT2G17360.2 Ribosomal protein S4 (RPS4A) family protein3.5e-3195.31Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein3.5e-3195.31Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein1.1e-1993.48Show/hide
Query:  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI

AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein3.5e-3195.31Show/hide
Query:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI
        MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+I
Subjt:  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGGGTTTGAAGAAACACTTGAAGAGGCTGAATGCTCCCAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCACAA
ATCAAGGGAATGTCTCCCATTAATCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTTATTGCAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGGGTTTGAAGAAACACTTGAAGAGGCTGAATGCTCCCAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCACAA
ATCAAGGGAATGTCTCCCATTAATCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTTATTGCAATTTGA
Protein sequenceShow/hide protein sequence
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAI