; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006799 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006799
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr06:12534969..12535391
RNA-Seq ExpressionPI0006799
SyntenyPI0006799
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040540.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-4670.92Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAE
        MEER+EGTEKE+L LKEM+LE+KK V+RLA++M+E+++ K+KE S   SDGS +KLKG M+E   MT+   T  DRSKYKKLEM MFLGENPESWVYRAE
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAE

Query:  HFFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        HFFEIN+LPESE+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  HFFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]5.5e-4771.43Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEIN+LPE+E+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

KAA0045289.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-4670.71Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEER+EGTEKE++GLKEMM+E++K+++RL E+MRE NN+ +KE S  SDGS +KLKG MEE  T T+     +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEI +LPESE+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

KAA0065941.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-4667.86Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEE ++GTEKE++GLKE+MLE+KK ++RLA++M+ES + K++E S  S+GS +KLKG MEE   MT+    SIDRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FF+IN+LPE+E+VKV VVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]5.5e-4771.43Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEIN+LPE+E+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

TrEMBL top hitse value%identityAlignment
A0A5A7TB62 Retrotransposon protein2.3e-4670.92Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAE
        MEER+EGTEKE+L LKEM+LE+KK V+RLA++M+E+++ K+KE S   SDGS +KLKG M+E   MT+   T  DRSKYKKLEM MFLGENPESWVYRAE
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAE

Query:  HFFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        HFFEIN+LPESE+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  HFFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

A0A5A7TII1 Uncharacterized protein2.7e-4771.43Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEIN+LPE+E+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

A0A5A7TVL8 Retrotransposon protein1.3e-4670.71Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEER+EGTEKE++GLKEMM+E++K+++RL E+MRE NN+ +KE S  SDGS +KLKG MEE  T T+     +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEI +LPESE+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

A0A5D3CXP0 Uncharacterized protein2.7e-4771.43Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FFEIN+LPE+E+VKVAVVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

A0A5D3E4T6 Retrotransposon protein1.7e-4667.86Show/hide
Query:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH
        MEE ++GTEKE++GLKE+MLE+KK ++RLA++M+ES + K++E S  S+GS +KLKG MEE   MT+    SIDRSKYKKLEM MFLGENPESWVYRAEH
Subjt:  MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEH

Query:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW
        FF+IN+LPE+E+VKV VVSFGQDEV+W+R ++ RKKVESW
Subjt:  FFEINDLPESERVKVAVVSFGQDEVEWFRRNNIRKKVESW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAGGTTGGAAGGAACGGAAAAAGAGGTATTGGGATTAAAGGAGATGATGTTGGAACTCAAGAAGGTTGTTGACCGATTAGCCGAAGACATGAGGGAAAGCAA
CAACACTAAACGAAAGGAGGGATCATGTGTGTCTGACGGATCCTCATTGAAACTAAAAGGAATAATGGAGGAACAAGGAACCATGACTGATCCAGGGACAACTTCCATAG
ACCGAAGTAAATATAAAAAGCTGGAGATGTCAATGTTCTTGGGAGAGAACCCAGAATCTTGGGTCTATAGAGCAGAGCACTTCTTTGAAATCAATGATCTGCCAGAGTCA
GAAAGGGTCAAAGTAGCAGTGGTGAGCTTTGGTCAAGATGAGGTAGAGTGGTTTAGACGGAACAATATTAGAAAGAAAGTTGAATCATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAGGTTGGAAGGAACGGAAAAAGAGGTATTGGGATTAAAGGAGATGATGTTGGAACTCAAGAAGGTTGTTGACCGATTAGCCGAAGACATGAGGGAAAGCAA
CAACACTAAACGAAAGGAGGGATCATGTGTGTCTGACGGATCCTCATTGAAACTAAAAGGAATAATGGAGGAACAAGGAACCATGACTGATCCAGGGACAACTTCCATAG
ACCGAAGTAAATATAAAAAGCTGGAGATGTCAATGTTCTTGGGAGAGAACCCAGAATCTTGGGTCTATAGAGCAGAGCACTTCTTTGAAATCAATGATCTGCCAGAGTCA
GAAAGGGTCAAAGTAGCAGTGGTGAGCTTTGGTCAAGATGAGGTAGAGTGGTTTAGACGGAACAATATTAGAAAGAAAGTTGAATCATGGTAA
Protein sequenceShow/hide protein sequence
MEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGIMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWVYRAEHFFEINDLPES
ERVKVAVVSFGQDEVEWFRRNNIRKKVESW