CuGenDBv2

Gene ID	PI0006801
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr03:19669125..19670691
RNA-Seq Expression	PI0006801
Synteny	PI0006801
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

78.1

Show/hide

Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.1e-48

78.1

Show/hide

Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

A0A5A7TU93 Gag/pol protein

1.1e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

A0A5A7TWB9 Gag/pol protein

1.1e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

A0A5A7V4M1 Gag/pol protein

1.1e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

A0A5D3CPJ6 Gag/pol protein

1.1e-48

78.1

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Query:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN
        +S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+HDA+KY+YNA M EG SVREHVL+MMV FNVAEMN AVIDE SQV FILESLP+SF QFRSNAVMN
Subjt:  MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMN

Query:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR
        KI YT+TTLLNELQTF+SLMK KGQK GEA V  S R
Subjt:  KIEYTMTTLLNELQTFQSLMKNKGQKEGEAIVVHSKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTGACATACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGACACGATGC
TATTAAGTACGTTTATAATGCTCATATGAAGGAAGGCAAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAATGAACGAGGCGGTCATTG
ACGAGCAGAGTCAGGTATACTTTATCTTAGAATCTCTTCCGAAGAGCTTCTTTCAATTCCGTAGCAATGCGGTTATGAATAAGATAGAATATACCATGACTACCCTCCTT
AACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAATTGTTGTCCATTCCAAGAGGTTTTATATGTTCTCCATTTTCGTTTTCTG
CCTGGTTGACTTGAAGCTTGCTTGGATCAAGATGATTTATGGTGGTCTTCAACTTCAGGGGGAGCCTTATTCTTCTTCATTAGATTCAAGCATAAACTCAAGGGGAGCCT
GA

mRNA sequence

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Protein sequence

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MSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHDAIKYVYNAHMKEGKSVREHVLDMMVQFNVAEMNEAVIDEQSQVYFILESLPKSFFQFRSNAVMNKIEYTMTTLL
NELQTFQSLMKNKGQKEGEAIVVHSKRFYMFSIFVFCLVDLKLAWIKMIYGGLQLQGEPYSSSLDSSINSRGA

PI0006801 (gene) of Melon (PI 482460) v1 genome