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PI0006833 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006833
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:19012015..19013426
RNA-Seq ExpressionPI0006833
SyntenyPI0006833
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.9e-3572.92Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3472.92Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-3573.68Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ
        CP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3472.63Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ
        CP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQ
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3471.88Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

TrEMBL top hitse value%identityAlignment
A0A5A7T4R3 Retrotransposon gag protein5.2e-3572.92Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

A0A5A7VQ60 Retrotransposon gag protein5.2e-3572.63Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ
        CP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQ
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ

A0A5D3CFE7 Retrotransposon gag protein6.9e-3571.88Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

A0A5D3CRR8 Retrotransposon gag protein4.0e-3573.68Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ
        CP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQ

E5GBZ4 Retrotransposon gag protein1.4e-3572.92Show/hide
Query:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP
        CP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQP
Subjt:  CPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCGGGGAGCGACGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCC
TAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAA
TTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCGATCACGCAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCGGGGAGCGACGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCC
TAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAA
TTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCGATCACGCAAATGTAA
Protein sequenceShow/hide protein sequence
MAPLRGATCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPITQM