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PI0006853 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006853
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr06:23321254..23321943
RNA-Seq ExpressionPI0006853
SyntenyPI0006853
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025972.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]7.5e-4659.14Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------------------
        RLYIT+ GA     RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++RGRV+VEE ELDEVYHNVEE+                    
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------------------

Query:  --GIG---------YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSR
          G+G         YYD GV PSSSYMDVGPSTSYMHGH H +    GEHNEYLY+EAPT+V D Q+YQQE +NQ+   Q RV SR
Subjt:  --GIG---------YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSR

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.3e-5864.85Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------
        RLYITR GA VG  RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VYHNVE                      
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------

Query:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG
                 EVGIGYYD GV PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNRRRPGCG
Subjt:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG

Query:  TH
        TH
Subjt:  TH

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]4.8e-5363.83Show/hide
Query:  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE-------------------------------EVGIG
        RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VYHNVE                               EVGIG
Subjt:  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE-------------------------------EVGIG

Query:  YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
        YYD GV PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNRR PGCGTH
Subjt:  YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH

TYK22189.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]4.8e-5368.39Show/hide
Query:  RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMD
        RS   V  LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRVEE ELDEVYH V+EV          GY   GV PSSSYMD
Subjt:  RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMD

Query:  VGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
        V PSTSYMHGH  G+     EHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQP +NRRRPGCGTH
Subjt:  VGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]3.1e-6065.35Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------
        RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R R RVEE ELDEVYHNVE                      
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------

Query:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG
                 EV IGYYD  V P SSYMDVGPSTSYM+GHG G+    GEHNEYLY+EAPTDV D Q+YQQE KNQ+   Q RV SRRRQP RNR+  GCG
Subjt:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG

Query:  TH
        TH
Subjt:  TH

TrEMBL top hitse value%identityAlignment
A0A5A7SLF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.6e-4659.14Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------------------
        RLYIT+ GA     RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++RGRV+VEE ELDEVYHNVEE+                    
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------------------

Query:  --GIG---------YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSR
          G+G         YYD GV PSSSYMDVGPSTSYMHGH H +    GEHNEYLY+EAPT+V D Q+YQQE +NQ+   Q RV SR
Subjt:  --GIG---------YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSR

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.4e-5964.85Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------
        RLYITR GA VG  RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VYHNVE                      
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------

Query:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG
                 EVGIGYYD GV PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNRRRPGCG
Subjt:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG

Query:  TH
        TH
Subjt:  TH

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X22.3e-5363.83Show/hide
Query:  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE-------------------------------EVGIG
        RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VYHNVE                               EVGIG
Subjt:  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE-------------------------------EVGIG

Query:  YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
        YYD GV PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNRR PGCGTH
Subjt:  YYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH

A0A5D3DFZ9 GATA zinc finger domain-containing protein 10-like isoform X22.3e-5368.39Show/hide
Query:  RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMD
        RS   V  LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRVEE ELDEVYH V+EV          GY   GV PSSSYMD
Subjt:  RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMD

Query:  VGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
        V PSTSYMHGH  G+     EHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQP +NRRRPGCGTH
Subjt:  VGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein1.5e-6065.35Show/hide
Query:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------
        RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R R RVEE ELDEVYHNVE                      
Subjt:  RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVE----------------------

Query:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG
                 EV IGYYD  V P SSYMDVGPSTSYM+GHG G+    GEHNEYLY+EAPTDV D Q+YQQE KNQ+   Q RV SRRRQP RNR+  GCG
Subjt:  ---------EVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCG

Query:  TH
        TH
Subjt:  TH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAA
TAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAG
TTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGG
CACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGC
GCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAA
TAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAG
TTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGG
CACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGC
GCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Protein sequenceShow/hide protein sequence
MRLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEVGIGYYDLGVSPSSSYMDVGPSTSYMHGHG
HGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH