; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0006909 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006909
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRRM domain-containing protein
Genome locationchr05:1041917..1046459
RNA-Seq ExpressionPI0006909
SyntenyPI0006909
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]1.9e-18198.27Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSLDNDRDQVLRRDNGLTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_004139331.2 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]1.7e-17794.17Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDY--------------DKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
        GID TDDY              DKSLDNDRDQVLRRDNGLTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Subjt:  GIDNTDDY--------------DKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK

Query:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_008457973.1 PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]2.1e-18097.69Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSLDNDRDQVLRRDN LTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]2.7e-15987.86Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDY+HDRYR RGRNNDWSR+RDRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSL +DRDQ+ RRDNGL I+GRTAR+LSSDSS DYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]3.7e-16992.49Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGY+HSQD D PKD+ LDRDPELEK+SKDNEKVHDLKLNHDQD EK+HGAD  GGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDN DDY+KSLDNDR+Q+ RRDNGLT +GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A0A0LIV9 RRM domain-containing protein8.0e-17894.17Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDY--------------DKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
        GID TDDY              DKSLDNDRDQVLRRDNGLTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Subjt:  GIDNTDDY--------------DKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK

Query:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A1S3C6W1 zinc finger CCCH domain-containing protein 251.0e-18097.69Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSLDNDRDQVLRRDN LTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 251.0e-18097.69Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSLDNDRDQVLRRDN LTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 259.1e-18298.27Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSLDNDRDQVLRRDNGLTI+GRTARDLSSDSS DYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa2.9e-15987.86Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDY+HDRYR RGRNNDWSR+RDRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSL +DRDQ+ RRDNGL I+GRTAR+LSSDSS DYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B5.1e-1235.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + ++GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------

Query:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD
         G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  +   DR +  D   DRD
Subjt:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD

P09406 U1 small nuclear ribonucleoprotein 70 kDa2.6e-0829.25Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRG----KCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-------------L
        D   +++V  + YD TE  LRR F++YG +  + I+ ++ + G    + Y F+ + + R    A K  DG+ I+GR V V+  + R             L
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRG----KCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-------------L

Query:  GG--RFGKEGN-RFDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNE-----KVH
        GG  R G + N R     D S   +RDR R+ D  R R R R  +  R+R RSR  +  ++   +  ++R   +++  D+D E +K +KD +     +  
Subjt:  GG--RFGKEGN-RFDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNE-----KVH

Query:  DLKLNHDQDWEK
        + K   D+D EK
Subjt:  DLKLNHDQDWEK

Q10B98 Zinc finger CCCH domain-containing protein 259.9e-0827.96Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV
        D + ++VGG+PYD TE  L  +F  YG VV V ++ D+ T + K + F+ + + RS I A+ +++G  + GR+VRV+ V S+   +  ++      +R+ 
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV

Query:  --------SWERDRDRGRDYDHDRYRHRGRNNDW-SRDRDRSR-EHDLDKERGYKHSQ-DRDLPKDQFLDRDPELEKTS--------KDNEKVHDLKLNH
                  E +R     Y HD    R  N  W S++  ++R EHD   E    H +      + +F DR  E  K++         +  K  D +L H
Subjt:  --------SWERDRDRGRDYDHDRYRHRGRNNDW-SRDRDRSR-EHDLDKERGYKHSQ-DRDLPKDQFLDRDPELEKTS--------KDNEKVHDLKLNH

Query:  DQDWEKDH-------GADLSGGGGIDNTDDYDKSLDNDRDQV---LRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLE
             KDH         + S G    N D Y +  D   ++    ++ D G     R+ RD  +DSSG Y     E  E
Subjt:  DQDWEKDH-------GADLSGGGGIDNTDDYDKSLDNDRDQV---LRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLE

Q18409 Probable splicing factor, arginine/serine-rich 65.1e-1237.27Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------
        D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++ +DG  I G   RV    G +   GGR G  G R      
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------

Query:  ---FDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRD
           +  +R  S  R RDRGRD   DR R R R+    R R+RSRE +  + R  +  Q+RD
Subjt:  ---FDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRD

Q66II8 U1 small nuclear ribonucleoprotein 70 kDa4.4e-0827.11Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKS---------RLGGRFG--
        D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    A K  DG+ I+GR V V+  +          RLGG  G  
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKS---------RLGGRFG--

Query:  --------------KEGNRFDAERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLD--RDPELEKTSK
                       + +R+D ERD   ER+RD   R R+ D +R R R R+ +  R R RSRE + +++R  + S+D+D  KD+  D  +D + ++  K
Subjt:  --------------KEGNRFDAERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLD--RDPELEKTSK

Query:  DNEKVHDLKLNHDQDWEK---------DHGADL------SGGGGIDNTD--------------------DYDKSLDNDRD-----QVLRRDNGLTIDGRT
           +  + K   D+D EK             D+      +G  GID  +                    D DK  D DRD     +   RD     D   
Subjt:  DNEKVHDLKLNHDQDWEK---------DHGADL------SGGGGIDNTD--------------------DYDKSLDNDRD-----QVLRRDNGLTIDGRT

Query:  ARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGE
         RD   D   D  H+ +       E+ EE   +   + E++ E
Subjt:  ARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGE

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.6e-1335.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + ++GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------

Query:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD
         G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  +   DR +  D   DRD
Subjt:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.6e-1335.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + ++GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------

Query:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD
         G E   F   R   W RD     D D +R+R     R R  D    RDR  + DL++ER  +   DR +  D   DRD
Subjt:  FGKEGNRFDAERDVSWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRD

AT3G50670.1 U1 small nuclear ribonucleoprotein-70K4.1e-0928.21Show/hide
Query:  TVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV---------NGVKSRLGGRFG
        T D   +++V  L Y+++E  ++R F+ YG +  V ++ D+ T + K Y F+ + + R    A K  DG+ I+GR V V         N    RLGG  G
Subjt:  TVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV---------NGVKSRLGGRFG

Query:  -----------------------KEGNRFDAERDVSWE--RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPE
                               +E +R   ER+ S E  ++R+R R+  H++ R R      SRDR R  +H  D+++G +  +DRD  +D+   RD  
Subjt:  -----------------------KEGNRFDAERDVSWE--RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPE

Query:  LEKTSKDNEKVHD-LKLNHDQDWEKDHGADLSGG
         ++  +D ++  D    +HD+D  +    D  GG
Subjt:  LEKTSKDNEKVHD-LKLNHDQDWEKDHGADLSGG

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-5845.56Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V +R GGR      R    
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVSWERDRDRGRD--YDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLS
            W+R  DR  D  Y+ DRY  R R  D S+DR +   + ++KER Y+HS D +   D   +DR+   E+    +E           DW  D  + + 
Subjt:  RDVSWERDRDRGRD--YDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLS

Query:  GGGGIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISA
         G GI+ T     S    R Q  +R++   +DG   RD  S+SSGD  H++KE LE   +  E LR EV  +EER   KE +  ELQKK+K+LED LI+ 
Subjt:  GGGGIDNTDDYDKSLDNDRDQVLRRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISA

Query:  KKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E   G
Subjt:  KKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 31.3e-1547.78Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG  G
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTGGACGACGATAGCTCGATATACGTCGGAGGTCTTCCTTACGATGCGACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAA
GATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGATATGGATGGAAGGACTATTGAAG
GGCGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGAGACGTGAGCTGGGAGAGGGATAGAGAT
CGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATA
TAAGCATTCACAAGATCGCGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTAAACC
ACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTA
AGGAGAGATAACGGTCTTACAATTGATGGTCGAACTGCTCGTGATCTTTCATCTGATTCTAGTGGTGATTATATCCACGAATTAAAGGAACAACTGGAGATATCAACAGA
AAGATTGGAAGAACTTCGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCAT
TGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTAAGAGGCTTAAAACCAGTGAACAA
GAACTTCAGGCCCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
GTTAAGTTTGCGTCTCACTTCCGACATGTCGATTAACGGTTCGTAGGCGAGTTTTTAACATTGGGAAAGGGAGTTCAGTAGTGTTCTTCTCGACTTTCTTCATTCTTCTC
GGAGATTGGATTTTCACGGTGCCCATGACGGTGGACGACGATAGCTCGATATACGTCGGAGGTCTTCCTTACGATGCGACGGAGGATAGTTTGCGCAGAATCTTCGATTT
GTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAG
ATATGGATGGAAGGACTATTGAAGGGCGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGAGAC
GTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACA
TGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGCGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGA
AGGTACATGACTTGAAGTTAAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTT
GACAATGACAGAGATCAAGTCTTAAGGAGAGATAACGGTCTTACAATTGATGGTCGAACTGCTCGTGATCTTTCATCTGATTCTAGTGGTGATTATATCCACGAATTAAA
GGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTCGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGA
AAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCT
AAGAGGCTTAAAACCAGTGAACAAGAACTTCAGGCCCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTGCAACCAATTTCAATTTATGCCAT
AACTTATAAGCCGAAAAAGCTGCATCGTGCTATTTTGTTGGCATGCAACTCTTCACTGTGGTTCGGGTATTCACGGTCTTTTGTTCATACTAATGACAAGTTGTCATGTA
GACATAGAATTCCTTTGTAACCTAATTTTCCCAAGATTAAGCTGTCCATTTATTTCGTGGTACGTTCACAATCAACTTGTTTTTACTAACTTTTGTCAAGTTAAATAGGT
AAAGTTATATTTAAAAATTAAATCTGGCATCCAAGTAGTTTTTCCACCTTGCCTGAAATTCCTTCCCATGAATGGAATTTTAAAGTTAAGGTTGTAATCCTTTTCAGATA
ACATCTCGACACATTTCAAACCGAATTCCATATCGGTATTTTGTTAAATTTCATCCCCTCTTTATCTTTTACTTACAATTTAACTCATTTTTCAAAAGCTGGACAAAAAA
GGAGAAAACAGGATGGGGAGTTCGTGTTCAACGAAAGAGACCGAAGAAGAAGAAAAAGTGTTTGAGAAATGCATCAAAAGGTACGCTTGAAAAGACATTTTAGAATTATA
TAGGGAAACAATTCTGCTCAGATTTATTGAATGAAATAGAATCTCTGTTGTGTCTTTCTTTTTTATGTTTCAAGCCTGACAGAAATGTCATAAATAAATGAAGTAAAGTT
AGTAGAGAATGTTTGAGATGGGAATTGGGAATGGTCCAAATAGGCCTTTTCTGGTGGATAGCAAAATTTAAAGAGACAAAAGCTAGTGAGAAAATGTAAGATGGTAACGT
GGTTACTTAGTAAAGTTTGTGAAAGCCAAGAGGAAATTAAGGTGGAAAGTTCTTCAGGCACAGACCTTTCGGTGCCTTGAAAATCTTCAAATTTCCTTAAACAAAT
Protein sequenceShow/hide protein sequence
MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRD
RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGGGIDNTDDYDKSLDNDRDQVL
RRDNGLTIDGRTARDLSSDSSGDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQ
ELQALVESTAIESDVG