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PI0006910 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006910
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:14121569..14121736
RNA-Seq ExpressionPI0006910
SyntenyPI0006910
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]6.1e-1063.64Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        MSPN++MG +PG  +EG+T S+G KRKRGGQA+E  EIIRN  +YANDQLK I +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

KAA0055556.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-0862.75Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK
        MSP+D+ G RPG  ++GR  S GSKRKR G   ET+EIIR  M+YANDQLK
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-1063.64Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        M P+D+MG RP R +E RTGSSGSKRK+GGQ +E++EIIR+ M+Y N QLKAI +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-1270.91Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        M  +D+MG RP R  EGRTGSSGSKRK+GGQA+ETMEIIRNVM+++ND+LKAI +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

TYK01364.1 retrotransposon protein [Cucumis melo var. makuwa]8.9e-0964.71Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK
        MSP+D+ G RPG  ++GR  S GSKRKRGG   ET+EIIR  M+YANDQLK
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL663.0e-1063.64Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        MSPN++MG +PG  +EG+T S+G KRKRGGQA+E  EIIRN  +YANDQLK I +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

A0A5A7UMR6 Retrotransposon protein3.6e-0862.75Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK
        MSP+D+ G RPG  ++GR  S GSKRKR G   ET+EIIR  M+YANDQLK
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK

A0A5A7V3C0 Retrotransposon protein3.9e-1063.64Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        M P+D+MG RP R +E RTGSSGSKRK+GGQ +E++EIIR+ M+Y N QLKAI +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

A0A5A7V469 Retrotransposon protein3.2e-1270.91Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK
        M  +D+MG RP R  EGRTGSSGSKRK+GGQA+ETMEIIRNVM+++ND+LKAI +
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK

A0A5D3BQB5 Retrotransposon protein4.3e-0964.71Show/hide
Query:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK
        MSP+D+ G RPG  ++GR  S GSKRKRGG   ET+EIIR  M+YANDQLK
Subjt:  MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCTAACGACGTCATGGGCATACGACCCGGTCGCTTAGCTGAGGGTAGGACTGGTTCGAGCGGATCGAAGAGGAAACGTGGAGGCCAGGCGTTAGAAACGATGGA
AATCATTCGCAATGTGATGAAGTATGCGAATGACCAACTGAAGGCCATTACAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCTAACGACGTCATGGGCATACGACCCGGTCGCTTAGCTGAGGGTAGGACTGGTTCGAGCGGATCGAAGAGGAAACGTGGAGGCCAGGCGTTAGAAACGATGGA
AATCATTCGCAATGTGATGAAGTATGCGAATGACCAACTGAAGGCCATTACAAAATGA
Protein sequenceShow/hide protein sequence
MSPNDVMGIRPGRLAEGRTGSSGSKRKRGGQALETMEIIRNVMKYANDQLKAITK