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PI0006945 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006945
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase
Genome locationchr04:16153157..16153618
RNA-Seq ExpressionPI0006945
SyntenyPI0006945
Gene Ontology termsGO:0006390 - mitochondrial transcription (biological process)
GO:0034245 - mitochondrial DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034491.1 DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa]3.0e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

XP_004135424.3 DNA-directed RNA polymerase 1B, mitochondrial [Cucumis sativus]6.2e-5281.34Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ K AASRKA LFS+ SSS+SRKVTED+IFLDQIRSSRSL++LN CCQSGGSSRI FLHP+KVGFTNSNFPHSSNPV FYGVL HAKGYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRG
        I EGDL G EEIQE+ME L+KQDKVE HFK+P+G
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRG

XP_008446482.1 PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X1 [Cucumis melo]3.0e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

XP_008446483.1 PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X2 [Cucumis melo]3.0e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

XP_038892390.1 DNA-directed RNA polymerase 1B, mitochondrial [Benincasa hispida]2.7e-3968.42Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRNI KR ASRK T FS+LSSS              IRSSR+L+SLN CCQS  S RI FLHP KVGFTNS+FPHSSNPVAFYGVL+HA GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I E DL G EEIQE++EELSKQ+K+E HFK+P+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

TrEMBL top hitse value%identityAlignment
A0A0A0KR04 DNA-directed RNA polymerase3.0e-5281.34Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ K AASRKA LFS+ SSS+SRKVTED+IFLDQIRSSRSL++LN CCQSGGSSRI FLHP+KVGFTNSNFPHSSNPV FYGVL HAKGYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRG
        I EGDL G EEIQE+ME L+KQDKVE HFK+P+G
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRG

A0A1S3BF55 DNA-directed RNA polymerase1.4e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

A0A1S3BF59 DNA-directed RNA polymerase1.4e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

A0A5A7SYG2 DNA-directed RNA polymerase1.4e-5483.46Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I EGDL G EEIQE+ME +SKQDKVEPHFKKP+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

A0A6J1HS83 DNA-directed RNA polymerase4.7e-3766.17Show/hide
Query:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA
        MWRNI KRAASR+ T F       SRKV ED IF+++IRSSR+L SL +CC   GS  I F H R+VGF  SN  HSS P+AFYGVL+HAKGYATAA+AA
Subjt:  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAA

Query:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR
        I E DL G EEIQE+MEELSKQDKVE HFK+P+
Subjt:  IVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCAAAAGCTTTCGGAATTGGGGATCTCTGGTACCAAAGAATGTGGAGAAACATTTGCAAAAGGGCTGCTTCAAGGAAAGCTACATTATTCTCCAAGTTGTCTTC
TTCTAGCTCAAGAAAAGTTACTGAAGACTATATCTTTCTTGATCAAATTAGATCTTCTAGGTCGCTAAAAAGCTTGAACGCTTGTTGCCAATCAGGGGGTTCTAGTAGAA
TCGGCTTTCTCCATCCCCGCAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAATCCCGTGGCGTTTTATGGGGTTCTAGACCATGCTAAAGGCTATGCTACT
GCTGCCAAGGCAGCCATTGTCGAAGGGGATTTATTGGGTTTCGAAGAAATTCAGGAAATGATGGAGGAGCTCAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGAAGCC
TAGAGGATGGTCAATGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCAAAAGCTTTCGGAATTGGGGATCTCTGGTACCAAAGAATGTGGAGAAACATTTGCAAAAGGGCTGCTTCAAGGAAAGCTACATTATTCTCCAAGTTGTCTTC
TTCTAGCTCAAGAAAAGTTACTGAAGACTATATCTTTCTTGATCAAATTAGATCTTCTAGGTCGCTAAAAAGCTTGAACGCTTGTTGCCAATCAGGGGGTTCTAGTAGAA
TCGGCTTTCTCCATCCCCGCAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAATCCCGTGGCGTTTTATGGGGTTCTAGACCATGCTAAAGGCTATGCTACT
GCTGCCAAGGCAGCCATTGTCGAAGGGGATTTATTGGGTTTCGAAGAAATTCAGGAAATGATGGAGGAGCTCAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGAAGCC
TAGAGGATGGTCAATGGAATAG
Protein sequenceShow/hide protein sequence
MTSKAFGIGDLWYQRMWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYAT
AAKAAIVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRGWSME