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PI0006973 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006973
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:17690801..17692191
RNA-Seq ExpressionPI0006973
SyntenyPI0006973
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.1e-2771.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N +RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A  TS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-2873.33Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        +KV KCGVCGL+GHPNDKCP+++E+ N +R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.9e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.4e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
A0A5A7UID2 Retrotransposon gag protein1.4e-2873.33Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        +KV KCGVCGL+GHPNDKCP+++E+ N +R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
A0A5D3CRR8 Retrotransposon gag protein4.1e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N +RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A  TS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
A0A5D3DCG3 Retrotransposon gag protein1.4e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
E5GBZ4 Retrotransposon gag protein5.3e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
        G  +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T+A PTS+NQGTNLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGCCATTAGGAAGTACGATCCCCAAGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGAAAGCAACTC
CTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGCAAGTTAGAAGGCAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGCCATTAGGAAGTACGATCCCCAAGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGAAAGCAACTC
CTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGCAAGTTAGAAGGCAAAGGTAA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTKATPTSNNQGTNLEDLQVRRQR