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PI0006980 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0006980
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:20029315..20029518
RNA-Seq ExpressionPI0006980
SyntenyPI0006980
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048587.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2177.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS+WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
KAA0065893.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATTV DDIHYIETSN+WSQWRD LAEEMF++WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
KAA0067470.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-2177.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
TYJ99699.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.9e-2177.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
TYK27175.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2177.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS+WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
TrEMBL top hitse value%identityAlignment
A0A5A7U2U5 Retrotransposon protein5.4e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS+WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
A0A5A7VCK9 Retrotransposon protein4.1e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATTV DDIHYIETSN+WSQWRD LAEEMF++WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
A0A5A7VJX3 Retrotransposon protein9.2e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
A0A5D3BL48 Putative nuclease HARBI19.2e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
A0A5D3DV38 Retrotransposon protein5.4e-2277.61Show/hide
Query:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
        +ACCLLHNLINREMTN ++  + DE DST+ATT  DDIHYIETSN+WSQWRD LAEEMFS+WELRNQ
Subjt:  MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGTTGTCTACTACACAACCTCATCAACAGGGAGATGACTAACACTGAAATGTCGAAGGATTACGACGAGGGTGATTCGACATACGCCACGACTGTCAATGACGA
CATTCATTATATTGAGACCTCAAACAAATGGAGTCAGTGGAGGGATGCTCTAGCCGAAGAAATGTTCAGCAAATGGGAGTTGCGTAATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGTTGTCTACTACACAACCTCATCAACAGGGAGATGACTAACACTGAAATGTCGAAGGATTACGACGAGGGTGATTCGACATACGCCACGACTGTCAATGACGA
CATTCATTATATTGAGACCTCAAACAAATGGAGTCAGTGGAGGGATGCTCTAGCCGAAGAAATGTTCAGCAAATGGGAGTTGCGTAATCAGTAA
Protein sequenceShow/hide protein sequence
MACCLLHNLINREMTNTEMSKDYDEGDSTYATTVNDDIHYIETSNKWSQWRDALAEEMFSKWELRNQ