; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0007003 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007003
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr02:12581666..12582245
RNA-Seq ExpressionPI0007003
SyntenyPI0007003
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-5459.38Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TV++ Y+RW KANEK                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FN+AEMN  VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

KAA0062798.1 gag/pol protein [Cucumis melo var. makuwa]8.4e-5565.87Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+RW KANEK          + S QI+H+A+KY+YNARM EG
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG

Query:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
         S+REHVL+MMV FNMAEMNE VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-6067.19Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD WTKAN+K                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y MTTLL ELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

TYJ96755.1 gag/pol protein [Cucumis melo var. makuwa]8.4e-5565.87Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+RW KANEK          + S QI+H+A+KY+YNARM EG
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG

Query:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
         S+REHVL+MMV FNMAEMNE VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-6067.19Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD WTKAN+K                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y MTTLL ELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.0e-5459.38Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TV++ Y+RW KANEK                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FN+AEMN  VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

A0A5A7V5A8 Gag/pol protein4.1e-5565.87Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+RW KANEK          + S QI+H+A+KY+YNARM EG
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG

Query:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
         S+REHVL+MMV FNMAEMNE VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

A0A5A7VA67 Gag/pol protein2.5e-6067.19Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD WTKAN+K                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y MTTLL ELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

A0A5D3BE74 Gag/pol protein4.1e-5565.87Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG
        M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+RW KANEK          + S QI+H+A+KY+YNARM EG
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEG

Query:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
         S+REHVL+MMV FNMAEMNE VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Subjt:  QSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

A0A5D3D0D9 Gag/pol protein2.5e-6067.19Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD WTKAN+K                               E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEK-------------------------------E

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y MTTLL ELQTF
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAAC
CGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATG
GCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGAT
AAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAAC
CGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATG
GCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGAT
AAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEKEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNM
AEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTFGLL