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PI0007006 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007006
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr01:14659488..14660381
RNA-Seq ExpressionPI0007006
SyntenyPI0007006
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]7.0e-5763.08Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKL---------------------------
        ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG YH + G PR  +K+                           
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKL---------------------------

Query:  --SGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
          SGL ANL KSS+F+AGV  E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQLVRSVL S QV+
Subjt:  --SGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]6.7e-5252.32Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------
        +E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG YH +SG PRC +K                            
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------

Query:  -------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCA
                                                   LSGL AN  KSS+F+AGV+ E A+ LA  MGF  G LPVRYLG+PLL+GRLRS++C 
Subjt:  -------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCA

Query:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
        PLIQRITSRIRS SARVLSFAGRLQLV SVL S QV+
Subjt:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]3.2e-5462.83Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK--------------LSGLI---------
        ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG YH + G PR  +K              L GL+         
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK--------------LSGLI---------

Query:  --ANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
              KSS+F+AGV  E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQLVRSVL S QV+
Subjt:  --ANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]1.3e-5557.48Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------
        +E + PISCC+V+YKCIS+ILADRLRVWLPS +SGNQ AF+ GRSI+DNILLCQE+VG YH   G PRC MK                            
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------

Query:  --------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGR
                            LSGL ANL KS +F+ GV+   A+ LA +MGF++G LPVRYLG+PLLS RLRSS+C PLIQRITSRIRSWSARVLSFAGR
Subjt:  --------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGR

Query:  LQLVRSVLRSFQVF
        LQLVRSVLRS QV+
Subjt:  LQLVRSVLRSFQVF

XP_031745634.1 uncharacterized protein LOC116406053 [Cucumis sativus]1.2e-5366.09Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKLSGLIANLEKSSMFMAGVDIEVATV---
        +E + PISCC+V+YKCIS+ILADRLRVWLPS +SGNQ AF+ GRSI+DNILLCQE+VG YH   G PRC MK+    A    +  F+ G+ I + T    
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKLSGLIANLEKSSMFMAGVDIEVATV---

Query:  -----LADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
             LA +MGF++G LPVRYLG+PLLS RLRSS+C PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS QV+
Subjt:  -----LADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.3e-5252.32Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------
        +E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG YH +SG PRC +K                            
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------

Query:  -------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCA
                                                   LSGL AN  KSS+F+AGV+ E A+ LA  MGF  G LPVRYLG+PLL+GRLRS++C 
Subjt:  -------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCA

Query:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
        PLIQRITSRIRS SARVLSFAGRLQLV SVL S QV+
Subjt:  PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

A0A1S4E258 uncharacterized protein LOC1034968801.6e-5462.83Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK--------------LSGLI---------
        ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG YH + G PR  +K              L GL+         
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK--------------LSGLI---------

Query:  --ANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
              KSS+F+AGV  E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQLVRSVL S QV+
Subjt:  --ANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

A0A5A7UP65 Reverse transcriptase7.5e-4946.62Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------
        +E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG YH +SG PRC +K                            
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------

Query:  ------------------------------------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLAD
                                                                                LSGL AN  KSS+F+AGV+ E A+ LA 
Subjt:  ------------------------------------------------------------------------LSGLIANLEKSSMFMAGVDIEVATVLAD

Query:  SMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
         MGF  G LPVRYLG+PLL+GRLRS++C PLIQRITSRIRS SARVLSFAGRLQLV SVL S QV+
Subjt:  SMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.4e-5763.08Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKL---------------------------
        ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG YH + G PR  +K+                           
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKL---------------------------

Query:  --SGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
          SGL ANL KSS+F+AGV  E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQLVRSVL S QV+
Subjt:  --SGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.0e-5052.65Show/hide
Query:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------
        ME +RPISCCNV+YKCISKILADRLRVWLPS I  NQSAF+ GRSI+DNILLCQE+V  YH +SG PRC +K                            
Subjt:  MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMK----------------------------

Query:  -------LSGLIANLEKSSMF-------------------------MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIR
               LS ++  + +S  F                            +  E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITSRIR
Subjt:  -------LSGLIANLEKSSMF-------------------------MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIR

Query:  SWSARVLSFAGRLQLVRSVLRSFQVF
        SW+A VLSFAGRLQLVRSVLRS QV+
Subjt:  SWSARVLSFAGRLQLVRSVLRSFQVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.0e-1350Show/hide
Query:  MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
        MAGV       +  S  FA G LPVRYLG+PLL+ ++ +S+  PL+++I  RI  W+AR LSFAGRLQL+ SV+ S   F
Subjt:  MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCCTTCTTTGATCAGTGGTAATCA
GTCAGCCTTTGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGTTAT
CGGGGTTAATTGCTAATCTGGAAAAGAGCTCTATGTTTATGGCGGGGGTTGACATTGAGGTTGCTACTGTGTTGGCTGATAGTATGGGGTTTGCGCTGGGTACTTTGCCT
GTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGATCTTCGAATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGAATTCGGTCTTGGTCGGCTAGAGTATT
ATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGGAGTTTTCAGGTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCCTTCTTTGATCAGTGGTAATCA
GTCAGCCTTTGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGTTAT
CGGGGTTAATTGCTAATCTGGAAAAGAGCTCTATGTTTATGGCGGGGGTTGACATTGAGGTTGCTACTGTGTTGGCTGATAGTATGGGGTTTGCGCTGGGTACTTTGCCT
GTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGATCTTCGAATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGAATTCGGTCTTGGTCGGCTAGAGTATT
ATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGGAGTTTTCAGGTCTTTTAG
Protein sequenceShow/hide protein sequence
MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKLSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLP
VRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF