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PI0007018 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007018
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:18830463..18831092
RNA-Seq ExpressionPI0007018
SyntenyPI0007018
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1039.24Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------
        M GPSCSGFGWNEE+QCII E +LFDSWVK     + LL         L  VF                             L D   E+I         
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------

Query:  --------VQVEV------RGN---GAIANWPKEKRATKVELRAEVVKQLQGIPELRS
                ++ EV       GN    AIA+W KEKRA ++E+RA+VVKQLQ IPELRS
Subjt:  --------VQVEV------RGN---GAIANWPKEKRATKVELRAEVVKQLQGIPELRS

KAA0063430.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.9e-0755.56Show/hide
Query:  MMVFHLVDQVKEEIVQVEVRGNG-----------------AIANWPKEKRATKVELRAEVVKQLQGIPELRS
        M   H V QV+E+IV+VEVRG                   AIANWPKEKRAT+VEL  EVVKQLQ IPEL+S
Subjt:  MMVFHLVDQVKEEIVQVEVRGNG-----------------AIANWPKEKRATKVELRAEVVKQLQGIPELRS

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]1.1e-3066.09Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK----------------RPLLMWDLMCQIVLMMVFHLVDQVKEEIVQVEVRGNGAIANWPKEKRATKVELR
        M GPSCS FGWNEEYQCI+ E ELFDSWVK                R LLMW  MCQ +LM VF LVDQVKEEIV VEV+GN AI  WPKE+RATKVEL 
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK----------------RPLLMWDLMCQIVLMMVFHLVDQVKEEIVQVEVRGNGAIANWPKEKRATKVELR

Query:  AEVVKQLQGIPELRS
         EVVKQLQ IPEL++
Subjt:  AEVVKQLQGIPELRS

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-0837.61Show/hide
Query:  GPSCSGFGWNEEYQCIIVEWELFDSWVK----------RPLLMWDLMCQIV-------------------LMMVFH----LVDQVKEEIVQVEVRGNGAI
        GPSCSGFGWNE++QCII E +LFD+WVK          +    +D +  +                    ++ +F+    L D   ++I    +   GAI
Subjt:  GPSCSGFGWNEEYQCIIVEWELFDSWVK----------RPLLMWDLMCQIV-------------------LMMVFH----LVDQVKEEIVQVEVRGNGAI

Query:  ANWPKEKRATKVELRAE
        A+WPKEKRAT+VELR E
Subjt:  ANWPKEKRATKVELRAE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.7e-0833.33Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------
        M GPSCSGFGWNEE+QCII E +LFDSW+K     + LL         L  VF                             L D   E+I         
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------

Query:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS
                              V    RG+                     AIA+WPKEKRA +VE+RA+VVKQLQ IP+LRS
Subjt:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein5.5e-3166.09Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK----------------RPLLMWDLMCQIVLMMVFHLVDQVKEEIVQVEVRGNGAIANWPKEKRATKVELR
        M GPSCS FGWNEEYQCI+ E ELFDSWVK                R LLMW  MCQ +LM VF LVDQVKEEIV VEV+GN AI  WPKE+RATKVEL 
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK----------------RPLLMWDLMCQIVLMMVFHLVDQVKEEIVQVEVRGNGAIANWPKEKRATKVELR

Query:  AEVVKQLQGIPELRS
         EVVKQLQ IPEL++
Subjt:  AEVVKQLQGIPELRS

A0A1S3B4L3 uncharacterized protein LOC1034859531.3e-0833.33Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------
        M GPSCSGFGWNEE+QCII E +LFDSW+K     + LL         L  VF                             L D   E+I         
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------

Query:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS
                              V    RG+                     AIA+WPKEKRA +VE+RA+VVKQLQ IP+LRS
Subjt:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS

A0A5A7U0H7 Retrotransposon protein1.3e-0833.33Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------
        M GPSCSGFGWNEE+QCII E +LFDSW+K     + LL         L  VF                             L D   E+I         
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------

Query:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS
                              V    RG+                     AIA+WPKEKRA +VE+RA+VVKQLQ IP+LRS
Subjt:  ----------------------VQVEVRGN--------------------GAIANWPKEKRATKVELRAEVVKQLQGIPELRS

A0A5D3D8J6 Retrotransposon protein3.8e-0837.61Show/hide
Query:  GPSCSGFGWNEEYQCIIVEWELFDSWVK----------RPLLMWDLMCQIV-------------------LMMVFH----LVDQVKEEIVQVEVRGNGAI
        GPSCSGFGWNE++QCII E +LFD+WVK          +    +D +  +                    ++ +F+    L D   ++I    +   GAI
Subjt:  GPSCSGFGWNEEYQCIIVEWELFDSWVK----------RPLLMWDLMCQIV-------------------LMMVFH----LVDQVKEEIVQVEVRGNGAI

Query:  ANWPKEKRATKVELRAE
        A+WPKEKRAT+VELR E
Subjt:  ANWPKEKRATKVELRAE

A0A5D3DG22 Retrotransposon protein6.3e-1139.24Show/hide
Query:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------
        M GPSCSGFGWNEE+QCII E +LFDSWVK     + LL         L  VF                             L D   E+I         
Subjt:  MTGPSCSGFGWNEEYQCIIVEWELFDSWVK-----RPLLMWDLMCQIVLMMVF----------------------------HLVDQVKEEI---------

Query:  --------VQVEV------RGN---GAIANWPKEKRATKVELRAEVVKQLQGIPELRS
                ++ EV       GN    AIA+W KEKRA ++E+RA+VVKQLQ IPELRS
Subjt:  --------VQVEV------RGN---GAIANWPKEKRATKVELRAEVVKQLQGIPELRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGGACCATCATGTAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATTGTAGAATGGGAGTTGTTTGATAGTTGGGTCAAGAGACCTTTGCTGATGTGGGA
TCTAATGTGCCAAATAGTTTTAATGATGGTGTTCCACTTGGTCGATCAAGTGAAGGAAGAAATTGTCCAAGTGGAAGTAAGAGGAAACGGGGCAATTGCAAATTGGCCAA
AAGAAAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTTGTGAAACAACTGCAAGGTATCCCTGAACTACGGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGGACCATCATGTAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATTGTAGAATGGGAGTTGTTTGATAGTTGGGTCAAGAGACCTTTGCTGATGTGGGA
TCTAATGTGCCAAATAGTTTTAATGATGGTGTTCCACTTGGTCGATCAAGTGAAGGAAGAAATTGTCCAAGTGGAAGTAAGAGGAAACGGGGCAATTGCAAATTGGCCAA
AAGAAAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTTGTGAAACAACTGCAAGGTATCCCTGAACTACGGAGCTGA
Protein sequenceShow/hide protein sequence
MTGPSCSGFGWNEEYQCIIVEWELFDSWVKRPLLMWDLMCQIVLMMVFHLVDQVKEEIVQVEVRGNGAIANWPKEKRATKVELRAEVVKQLQGIPELRS