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PI0007022 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007022
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr01:21832053..21832625
RNA-Seq ExpressionPI0007022
SyntenyPI0007022
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-4974.45Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA
        VM+CPEERKRDEFLG KQGSLS+ EYE+KYTELSRYA
Subjt:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA

KAA0051049.1 uncharacterized protein E6C27_scaffold678G00020 [Cucumis melo var. makuwa]3.9e-4566.88Show/hide
Query:  MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVM
        MPP TSRR +QNQD  Q PTQ Q  G +STPRV+ G  NEQFARAAQEIGR ERA+ NDP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM
Subjt:  MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVM

Query:  SCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA
         CPE+R                   KRDEFLG KQGSLS+AEYE+KYTELSRYA
Subjt:  SCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA

KAA0067829.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.8e-4566.45Show/hide
Query:  VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDV
        VMPPRTSRR +QNQDG Q PTQ    G SST RV+ GA NEQF R AQEIGRPER EP+DPK+ YGIERLKKLG T+FEG+ D  +AE W NMLEKCFDV
Subjt:  VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDV

Query:  MSCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA
        M+CPEER                   KRDEFLG KQGSLS+AEYE+K TELSRYA
Subjt:  MSCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.5e-4456.15Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRTSRRHKQNQD TQDPTQ Q + GSSTPR Q  A +E+FAR+AQEIGRPER  P+DP+KMYGIERLKKLG T+FEG+TD  +AEVW NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEER---------------------------------------------------KRDEFLGWKQGSLSLAEYEKKYTELSRY
        VM+CP++R                                                   KRDEF   KQGSLS+AEYE+KYTELSRY
Subjt:  VMSCPEER---------------------------------------------------KRDEFLGWKQGSLSLAEYEKKYTELSRY

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-4974.45Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA
        VM+CPEERKRDEFLG KQGSLS+ EYE+KYTELSRYA
Subjt:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA

TrEMBL top hitse value%identityAlignment
A0A5A7TI15 Reverse transcriptase1.7e-4974.45Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA
        VM+CPEERKRDEFLG KQGSLS+ EYE+KYTELSRYA
Subjt:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA

A0A5A7UBY2 Retrotrans_gag domain-containing protein1.9e-4566.88Show/hide
Query:  MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVM
        MPP TSRR +QNQD  Q PTQ Q  G +STPRV+ G  NEQFARAAQEIGR ERA+ NDP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM
Subjt:  MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVM

Query:  SCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA
         CPE+R                   KRDEFLG KQGSLS+AEYE+KYTELSRYA
Subjt:  SCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA

A0A5A7VRP7 Retrotransposon protein, putative, Ty3-gypsy subclass8.5e-4666.45Show/hide
Query:  VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDV
        VMPPRTSRR +QNQDG Q PTQ    G SST RV+ GA NEQF R AQEIGRPER EP+DPK+ YGIERLKKLG T+FEG+ D  +AE W NMLEKCFDV
Subjt:  VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDV

Query:  MSCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA
        M+CPEER                   KRDEFLG KQGSLS+AEYE+K TELSRYA
Subjt:  MSCPEER-------------------KRDEFLGWKQGSLSLAEYEKKYTELSRYA

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.2e-4456.15Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRTSRRHKQNQD TQDPTQ Q + GSSTPR Q  A +E+FAR+AQEIGRPER  P+DP+KMYGIERLKKLG T+FEG+TD  +AEVW NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEER---------------------------------------------------KRDEFLGWKQGSLSLAEYEKKYTELSRY
        VM+CP++R                                                   KRDEF   KQGSLS+AEYE+KYTELSRY
Subjt:  VMSCPEER---------------------------------------------------KRDEFLGWKQGSLSLAEYEKKYTELSRY

A0A5D3C7J1 Reverse transcriptase1.7e-4974.45Show/hide
Query:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD
        GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFD
Subjt:  GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFD

Query:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA
        VM+CPEERKRDEFLG KQGSLS+ EYE+KYTELSRYA
Subjt:  VMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTATGCCACCACGTACCAGCAGGCGACACAAGCAGAATCAGGACGGGACGCAGGATCCTACGCAGGCTCAGTTTAAGGGAGGATCCAGTACCCCAAGAGTTCA
GACTGGGGCAATAAATGAGCAGTTTGCTAGAGCTGCACAGGAGATAGGTAGGCCAGAGAGAGCAGAGCCTAATGATCCAAAAAAGATGTACGGAATAGAACGACTGAAAA
AGTTGGGAGACACAATGTTTGAGGGTACCACAGATCTGACTGACGCCGAGGTTTGGTTTAATATGCTTGAGAAATGTTTCGATGTTATGAGTTGTCCCGAGGAGCGAAAA
AGGGACGAGTTTCTGGGGTGGAAGCAGGGGTCACTTTCATTGGCTGAGTATGAAAAGAAGTATACCGAGCTTTCACGGTATGCGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTATGCCACCACGTACCAGCAGGCGACACAAGCAGAATCAGGACGGGACGCAGGATCCTACGCAGGCTCAGTTTAAGGGAGGATCCAGTACCCCAAGAGTTCA
GACTGGGGCAATAAATGAGCAGTTTGCTAGAGCTGCACAGGAGATAGGTAGGCCAGAGAGAGCAGAGCCTAATGATCCAAAAAAGATGTACGGAATAGAACGACTGAAAA
AGTTGGGAGACACAATGTTTGAGGGTACCACAGATCTGACTGACGCCGAGGTTTGGTTTAATATGCTTGAGAAATGTTTCGATGTTATGAGTTGTCCCGAGGAGCGAAAA
AGGGACGAGTTTCTGGGGTGGAAGCAGGGGTCACTTTCATTGGCTGAGTATGAAAAGAAGTATACCGAGCTTTCACGGTATGCGATGTGA
Protein sequenceShow/hide protein sequence
MGVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERK
RDEFLGWKQGSLSLAEYEKKYTELSRYAM