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PI0007078 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007078
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:22697120..22697879
RNA-Seq ExpressionPI0007078
SyntenyPI0007078
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-5854.18Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG-----
        M  +Q++ER+E TEKE+L +KEM+LEMKKA DR++ ++KE  SY++++ESG TSDGSVMKLKGK++E +   EI+G   DRSKYKKLEMP+F+G      
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG-----

Query:  -----------------------VIIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVL
                               V  G+      + SH             RMF+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL
Subjt:  -----------------------VIIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVL

Query:  KDAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGIT
         DAFVTGLEP+LQ E++SR+PQTLE CMREAQLVNDRNLALKL+  +LG+T
Subjt:  KDAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGIT

KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]8.0e-5852.61Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------
        M  +Q++ERLE TEKEVL LKEM+LEMKK+ DR++ +L+E  SY++++ESGTSDGS+MK+KGK+ E +IT E++   VDRSKYKKLEMP+F+G       
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------

Query:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK
                              V  G+      + SH             RMF+ FRD    SLGARLIRI Q+G+YN+YVKKF+NYSAPL  +AESVL+
Subjt:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK

Query:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI
         AF+TGLEPALQ E++SR+PQTL+ CM  AQLVN+RNLALKLA  ++GI
Subjt:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI

KAA0051198.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-6058.93Show/hide
Query:  QIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GVIIGR
        Q++ER+E TEKE+L LKEM+LEMKKA +R++ ++KE  SY++++ESG TSDGSVMKLKGK++E E+  E +G   DRSKYKKLEMP+F+G      + G+
Subjt:  QIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GVIIGR

Query:  ------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTLEACM
              + SH             R+F+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL DAFVTGLEP+LQ E++SR+PQTLE CM
Subjt:  ------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTLEACM

Query:  REAQLVNDRNLALKLATTKLGITK
        REAQLVNDRNLALKL   +LG+ +
Subjt:  REAQLVNDRNLALKLATTKLGITK

TYK03703.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-6158.77Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GV
        M  +Q++ER+E TEKE+L LKEM+LEMKKA +R++ ++KE  SY++++ESG TSDGSVMKLKGK++E E+  E +G   DRSKYKKLEMP+F+G      
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GV

Query:  IIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTL
        + G+      + SH             RMF+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL DAFVTGLEP+LQ E++SR+PQTL
Subjt:  IIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTL

Query:  EACMREAQLVNDRNLALKLATTKLGITK
        E CMREAQLVNDRNLALKL   +LG+ +
Subjt:  EACMREAQLVNDRNLALKLATTKLGITK

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]8.0e-5852.61Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------
        M  +Q++ERLE TEKEVL LKEM+LEMKK+ DR++ +L+E  SY++++ESGTSDGS+MK+KGK+ E +IT E++   VDRSKYKKLEMP+F+G       
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------

Query:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK
                              V  G+      + SH             RMF+ FRD    SLGARLIRI Q+G+YN+YVKKF+NYSAPL  +AESVL+
Subjt:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK

Query:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI
         AF+TGLEPALQ E++SR+PQTL+ CM  AQLVN+RNLALKLA  ++GI
Subjt:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein6.0e-5954.18Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG-----
        M  +Q++ER+E TEKE+L +KEM+LEMKKA DR++ ++KE  SY++++ESG TSDGSVMKLKGK++E +   EI+G   DRSKYKKLEMP+F+G      
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG-----

Query:  -----------------------VIIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVL
                               V  G+      + SH             RMF+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL
Subjt:  -----------------------VIIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVL

Query:  KDAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGIT
         DAFVTGLEP+LQ E++SR+PQTLE CMREAQLVNDRNLALKL+  +LG+T
Subjt:  KDAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGIT

A0A5A7TII1 Uncharacterized protein3.9e-5852.61Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------
        M  +Q++ERLE TEKEVL LKEM+LEMKK+ DR++ +L+E  SY++++ESGTSDGS+MK+KGK+ E +IT E++   VDRSKYKKLEMP+F+G       
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------

Query:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK
                              V  G+      + SH             RMF+ FRD    SLGARLIRI Q+G+YN+YVKKF+NYSAPL  +AESVL+
Subjt:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK

Query:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI
         AF+TGLEPALQ E++SR+PQTL+ CM  AQLVN+RNLALKLA  ++GI
Subjt:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI

A0A5A7U7D1 Retrotransposon protein1.9e-6058.93Show/hide
Query:  QIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GVIIGR
        Q++ER+E TEKE+L LKEM+LEMKKA +R++ ++KE  SY++++ESG TSDGSVMKLKGK++E E+  E +G   DRSKYKKLEMP+F+G      + G+
Subjt:  QIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GVIIGR

Query:  ------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTLEACM
              + SH             R+F+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL DAFVTGLEP+LQ E++SR+PQTLE CM
Subjt:  ------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTLEACM

Query:  REAQLVNDRNLALKLATTKLGITK
        REAQLVNDRNLALKL   +LG+ +
Subjt:  REAQLVNDRNLALKLATTKLGITK

A0A5D3BVG6 Retrotransposon protein9.8e-6258.77Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GV
        M  +Q++ER+E TEKE+L LKEM+LEMKKA +R++ ++KE  SY++++ESG TSDGSVMKLKGK++E E+  E +G   DRSKYKKLEMP+F+G      
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESG-TSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVG----GV

Query:  IIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTL
        + G+      + SH             RMF+ FRD    SLGARLIRI QDG+YNEYVKKF+ YSAPL  +AESVL DAFVTGLEP+LQ E++SR+PQTL
Subjt:  IIGR------KLSH------------GRMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTL

Query:  EACMREAQLVNDRNLALKLATTKLGITK
        E CMREAQLVNDRNLALKL   +LG+ +
Subjt:  EACMREAQLVNDRNLALKLATTKLGITK

A0A5D3CXP0 Uncharacterized protein3.9e-5852.61Show/hide
Query:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------
        M  +Q++ERLE TEKEVL LKEM+LEMKK+ DR++ +L+E  SY++++ESGTSDGS+MK+KGK+ E +IT E++   VDRSKYKKLEMP+F+G       
Subjt:  MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGG------

Query:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK
                              V  G+      + SH             RMF+ FRD    SLGARLIRI Q+G+YN+YVKKF+NYSAPL  +AESVL+
Subjt:  ----------------------VIIGR------KLSHG------------RMFDHFRDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLK

Query:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI
         AF+TGLEPALQ E++SR+PQTL+ CM  AQLVN+RNLALKLA  ++GI
Subjt:  DAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATAAACAGATAGATGAAAGGCTAGAGAATACAGAAAAGGAAGTGTTGGATCTCAAAGAGATGATTCTCGAGATGAAGAAGGCATGCGACCGAATGTCTAAAGA
CTTGAAGGAGGGGAGCTCCTATAGGCGAAGGGATGAATCTGGAACTTCCGATGGATCTGTCATGAAACTCAAAGGAAAAGTGAATGAATTCGAGATTACTAGAGAAATCA
GTGGAGGGACAGTGGACAGAAGCAAATACAAAAAGCTTGAAATGCCCCTTTTCGTAGGTGGAGTAATAATAGGAAGAAAATTGAGTCATGGACGAATGTTTGATCATTTT
AGAGATCAATGTCCTGGAAGCTTGGGGGCCAGACTGATTCGAATCACCCAAGATGGAACCTACAATGAGTATGTCAAAAAATTTCTCAACTATTCGGCTCCTCTGTCGGA
CATAGCTGAGAGTGTGCTGAAGGATGCCTTTGTAACTGGGTTGGAGCCTGCTCTTCAAGTCGAAATAGTGAGTAGATATCCTCAAACGTTAGAGGCATGTATGAGGGAGG
CACAATTAGTTAATGACAGGAACCTAGCGCTGAAATTGGCCACAACAAAGTTGGGTATAACGAAAACAAGTAGTCCTACAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATAAACAGATAGATGAAAGGCTAGAGAATACAGAAAAGGAAGTGTTGGATCTCAAAGAGATGATTCTCGAGATGAAGAAGGCATGCGACCGAATGTCTAAAGA
CTTGAAGGAGGGGAGCTCCTATAGGCGAAGGGATGAATCTGGAACTTCCGATGGATCTGTCATGAAACTCAAAGGAAAAGTGAATGAATTCGAGATTACTAGAGAAATCA
GTGGAGGGACAGTGGACAGAAGCAAATACAAAAAGCTTGAAATGCCCCTTTTCGTAGGTGGAGTAATAATAGGAAGAAAATTGAGTCATGGACGAATGTTTGATCATTTT
AGAGATCAATGTCCTGGAAGCTTGGGGGCCAGACTGATTCGAATCACCCAAGATGGAACCTACAATGAGTATGTCAAAAAATTTCTCAACTATTCGGCTCCTCTGTCGGA
CATAGCTGAGAGTGTGCTGAAGGATGCCTTTGTAACTGGGTTGGAGCCTGCTCTTCAAGTCGAAATAGTGAGTAGATATCCTCAAACGTTAGAGGCATGTATGAGGGAGG
CACAATTAGTTAATGACAGGAACCTAGCGCTGAAATTGGCCACAACAAAGTTGGGTATAACGAAAACAAGTAGTCCTACAAGCTAA
Protein sequenceShow/hide protein sequence
MVNKQIDERLENTEKEVLDLKEMILEMKKACDRMSKDLKEGSSYRRRDESGTSDGSVMKLKGKVNEFEITREISGGTVDRSKYKKLEMPLFVGGVIIGRKLSHGRMFDHF
RDQCPGSLGARLIRITQDGTYNEYVKKFLNYSAPLSDIAESVLKDAFVTGLEPALQVEIVSRYPQTLEACMREAQLVNDRNLALKLATTKLGITKTSSPTS