CuGenDBv2

Gene ID	PI0007096
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	chr03:2120451..2125772
RNA-Seq Expression	PI0007096
Synteny	PI0007096
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain IPR040504 - TFIIF, beta subunit, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]

1.9e-137

87.16

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]

4.9e-138

87.16

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]

1.6e-136

86.15

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Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]

7.3e-134

85.14

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Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]

6.0e-136

86.82

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Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRL0 Transcription initiation factor IIF subunit beta

9.0e-138

87.16

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta

2.4e-138

87.16

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta

2.4e-138

87.16

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta

7.7e-137

86.15

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta

3.6e-134

85.14

Show/hide

Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQ                                    VIDNDRGVHMRPMPGMVG
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVG

Query:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

SwissProt top hits

e value

%identity

Alignment

O94424 Transcription initiation factor IIF subunit beta

6.5e-16

27.87

Show/hide

Query:  SSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGKV
        + +LD G+    VWL+K P  +   W + P  D   L  V +  D +Q    +S          E  +VPK ++L +   FV    VF E    +S    
Subjt:  SSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLIS-S
        ++ G V H+ ++ P     + Y ++ ++R   +    R++Q                                    +ID DRG  +   PG +G  S S
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLIS-S

Query:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE
        T+   + V P     +K +R  R EL DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++
Subjt:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE

P41900 General transcription factor IIF subunit 2

6.1e-14

25.34

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----
        +LD   A R VWL+K P  +A+ W+  P +           P   A+V LSL P    L  +E    +  ++++      V K  +L +F    P     
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----

Query:  --MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVH
              ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q                                 IDK++ N     
Subjt:  --MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVH

Query:  MRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
         +P+      I    +E+KK      ++ K+ R D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  MRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 2

6.1e-14

25.8

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Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISS
        +S+EG V  + +              CR   +++ +K +++Q+            SS P     Q           DKV+      + +P+      I  
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISS

Query:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
          K+K+        D KR R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 2

9.3e-15

26.15

Show/hide

Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISS
        +S+EG V  + +              CR   N++ ++ +++Q+            SS P     QL          DKV+      + +P+      I  
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISS

Query:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
          K+K+        D KR R D+  + D++F  FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Subjt:  TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q8R0A0 General transcription factor IIF subunit 2

2.3e-13

26.24

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Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKV
        +L   K +  VWL+K P  +++ W     S    + K+ ++ +  +++ S +L   +     + G  P S S      FV        + VF+E+S  K+
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISST
        S+EG V  + +              CR   +++ +K +++Q+            SS P     QL          DKV+      + +P+      I   
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISST

Query:  SKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
         K+K+        D KR R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  SKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

4.3e-92

59.15

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Query:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF
        MED H       NLD  K+DRS+WLMKCP++V K+W     S          P  +AK++  +DPL+ D  S  +FKM M G E GN+PK ++LNMF DF
Subjt:  MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF

Query:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVH
        VPM  FS+ +QG  + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQ                                    VIDNDRGVH
Subjt:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVH

Query:  MRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE
        MRPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E
Subjt:  MRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE

Query:  -DTGGE
         DTGG+
Subjt:  -DTGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

8.2e-75

51.92

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Query:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV
        L+TG A+RS+ LMK P LVA S Q+H        P DP  P AKVIL +DPL + E    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISST
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQ                                    VIDN RG+HMRPMPGM+  I + 
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISST

Query:  SKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED
        + EKKK+   + S++KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Subjt:  SKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGATGAGCATGGCGGCGGCGGTAGTAGCAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGTCCGTTGCTAGTCGCTAAGTCATGGCA
GGCTCATCCTCCATCTGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAA
CTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAA
GTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGT
ACATCATCAAGAGCCCTTTTCCTTTTTCCTAATACTTTCCTCAAGTCCCACTACTCCATGTTTGCAATTGATTTTACATTTCACGTTCTTCTTATGTATTGATAAGGTGA
TAGACAACGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTG
AAAAGAACTAGAAGAGATCGTGGAGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGC
TCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAAGACACCG
GTGGAGAATAG

mRNA sequence

Show/hide mRNA sequence

AAAAGAAAAAAACTGAGAAAGAGAAAGTTACTCTCTAGAGCAACAATCAGAAGCGGTCGGTAGCACCGCAAATTTGTGTCTTCGTCAGAAGAAAGTCAATACTCGATTGA
GAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATATAGATTACATCAGTTGTACCATAATCTTCTGGTACTGATTGCGTAATATCAAACCTCCCTCTGATTTCCGAC
CACCGCCTTCCACTTCTTTAGGGTCCACTCCTCTTCCGTCCACGGACTTCCACACCACCCTCGTCTCAAAAAAGAAAAAAAAAAAGAAAAAGAAAGGAACAAAGTTGCAG
TAAATCCGCCGTTGAAAATTCAGACCAGAGAGAGAGAGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCATGGCGGCGGCGGTAGTAGCAGTAACTTGGATACAGGA
AAGGCGGATAGATCAGTGTGGCTGATGAAGTGTCCGTTGCTAGTCGCTAAGTCATGGCAGGCTCATCCTCCATCTGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCT
CGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACT
TTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTAT
GGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTACATCATCAAGAGCCCTTTTCCTTTTTCCTAATACTTTCCTCAAGTCCCAC
TACTCCATGTTTGCAATTGATTTTACATTTCACGTTCTTCTTATGTATTGATAAGGTGATAGACAACGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTT
TGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGAGAACTAGAAGATATAATGTTCAAGCTA
TTTGAAAGACAACCAAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAAAGAGG
GACTAATCAAGGAACATACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAAGACACCGGTGGAGAATAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCT
TGGGGTAAGTGGAAATGATCAGAATAAATCTGCTAATTTAAGAAAAATATTTTACTTTTCCTTTTGTTATATTTCATGGGAGGGGAGAGATGGGAGGTTGAAAGAAATTG
GTTTAAATTAATTGCTATAGGTAACTTTATACTGAAGTAAAACCAAATGTGAAATGAGAGTTGGGGGGTGGAGTTTCTCTTATGGCAATTACGTGCAAGGTCGTCGGAAG
TTGCAAGATGAATCTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTTAACAAATTTGATTTTTCATTGACTTTTTA

Protein sequence

Show/hide protein sequence

MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGK
VEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVHHQEPFSFFLILSSSPTTPCLQLILHFTFFLCIDKVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDV
KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

PI0007096 (gene) of Melon (PI 482460) v1 genome