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PI0007170 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007170
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr04:1949477..1949890
RNA-Seq ExpressionPI0007170
SyntenyPI0007170
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]2.7e-4666.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDGSNY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL + HEGT+KVK+SRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

AAO73527.1 gag-pol polyprotein [Glycine max]9.2e-4767.63Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDGSNY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL + HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

AAO73529.1 gag-pol polyprotein [Glycine max]7.8e-4666.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDG+NY YWKARM AFLKS+DSRTWKA+I GW HP   + EG     LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

NP_001235160.1 gag-protease polyprotein [Glycine max]3.9e-4566.19Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDG+NY YWKARM AFLKS+DSRTWKA+I  W HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

NRJ45860.1 hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]7.8e-4666.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDG NY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

TrEMBL top hitse value%identityAlignment
Q84VH6 Gag-pol polyprotein3.8e-4666.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDG+NY YWKARM AFLKS+DSRTWKA+I GW HP   + EG     LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

Q84VH8 Gag-pol polyprotein4.4e-4767.63Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDGSNY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL + HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

Q84VI2 Gag-pol polyprotein5.4e-4566.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDGSNY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DA +IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

Q84VI4 Gag-pol polyprotein1.3e-4666.91Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDGSNY YWKARM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL + HEGT+KVK+SRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

V9H042 Gag-protease polyprotein1.9e-4566.19Show/hide
Query:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN
        M   +EGG   RPP+LDG+NY YWKARM AFLKS+DSRTWKA+I  W HP   + EG   + LKPE++W   EDE ALGNS+ALNALFNGVD+N  +LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEG--VEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLIN

Query:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM
        TCT A DAW+IL   HEGT+KVKMSRLQ+L++KFENLKM
Subjt:  TCTSAADAWQILAVAHEGTTKVKMSRLQMLSSKFENLKM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTATTAGGGAAGGAGGCTCTACCACCAGACCACCTGTTCTGGACGGATCAAACTATGCATATTGGAAAGCAAGAATGACTGCCTTCCTCAAATCAGTTGACAG
CAGAACCTGGAAAGCCATCATTGTGGGATGGACTCATCCAACAACTACTAATAATGAAGGAGTTGAAATTCTAAAACCAGAGAAAAACTGGAATGATGTTGAGGACGAAA
CTGCACTAGGAAATTCCCGAGCCTTGAATGCATTATTCAATGGTGTTGATCAAAACACTTCCAAACTCATCAACACGTGCACCTCTGCTGCTGATGCATGGCAAATTCTG
GCTGTAGCTCATGAAGGAACTACGAAGGTCAAAATGTCTCGTCTTCAAATGTTATCATCTAAATTTGAAAATCTTAAAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTATTAGGGAAGGAGGCTCTACCACCAGACCACCTGTTCTGGACGGATCAAACTATGCATATTGGAAAGCAAGAATGACTGCCTTCCTCAAATCAGTTGACAG
CAGAACCTGGAAAGCCATCATTGTGGGATGGACTCATCCAACAACTACTAATAATGAAGGAGTTGAAATTCTAAAACCAGAGAAAAACTGGAATGATGTTGAGGACGAAA
CTGCACTAGGAAATTCCCGAGCCTTGAATGCATTATTCAATGGTGTTGATCAAAACACTTCCAAACTCATCAACACGTGCACCTCTGCTGCTGATGCATGGCAAATTCTG
GCTGTAGCTCATGAAGGAACTACGAAGGTCAAAATGTCTCGTCTTCAAATGTTATCATCTAAATTTGAAAATCTTAAAATGTAG
Protein sequenceShow/hide protein sequence
METIREGGSTTRPPVLDGSNYAYWKARMTAFLKSVDSRTWKAIIVGWTHPTTTNNEGVEILKPEKNWNDVEDETALGNSRALNALFNGVDQNTSKLINTCTSAADAWQIL
AVAHEGTTKVKMSRLQMLSSKFENLKM