CuGenDBv2

Gene ID	PI0007178
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr02:17188718..17189526
RNA-Seq Expression	PI0007178
Synteny	PI0007178
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.3e-84

81.5

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LV+LNQ+  +SVNEYLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH NPLPSLDAAVQ ILFEEKRLGI+S+L 
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH R  NE+ FCKN KLHGHKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFS K GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.5e-84

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LVNLNQ+  +SVN+YLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH N LPSLDAAVQ ILFE+KRLG++S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
         DVALATTH R  NE++FCKN KLH HKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFSPK GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]

8.7e-85

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LV+LNQ+  +SVNEYLAT LQPIWTQL+QAKISPDHIRLIKVLMGLRPEYESVRA LLH NPLPSLDAAVQ ILFEEKRLGI+S+L 
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH R  NE+ FCKN KLHGHKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFS K GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]

2.5e-84

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LVNLNQ+  +SVN+YLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH N LPSLDAAVQ ILFE+KRLG++S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
         DVALATTH R  NE++FCKN KLH HKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFSPK GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]

4.9e-88

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHSRLV+LNQ+  +SVNEYLAT LQPIWTQLDQAKI+P+HIRLIKVLMGLRPEYESVRA LLH NPLPSLDAA+Q ILFEE RLGI+S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH RS NES FCKN KLHGHKFANCPTIEC YCHK+GHIL+NCPT PPRPPG P+K K S K  SP +VA  TPSDITTP NFQLNDL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BBA1 uncharacterized protein LOC103488200

4.2e-85

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LV+LNQ+  +SVNEYLAT LQPIWTQL+QAKISPDHIRLIKVLMGLRPEYESVRA LLH NPLPSLDAAVQ ILFEEKRLGI+S+L 
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH R  NE+ FCKN KLHGHKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFS K GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

A0A1S3BPL0 uncharacterized protein LOC103491828

1.2e-84

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LVNLNQ+  +SVN+YLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH N LPSLDAAVQ ILFE+KRLG++S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
         DVALATTH R  NE++FCKN KLH HKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFSPK GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

A0A5A7TPN5 Putative mitochondrial protein

1.2e-84

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LVNLNQ+  +SVN+YLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH N LPSLDAAVQ ILFE+KRLG++S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
         DVALATTH R  NE++FCKN KLH HKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFSPK GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

A0A5A7TXR0 Putative mitochondrial protein

3.6e-84

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LVNLNQ+  +SVNEYL T  QPIWTQLDQAKISPDHIRLIKVLMGLR EYESVRA LLH NPLPSLDAAVQ ILFEEKRLGI+S+LP
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH R  NE++FCKN KLHGHKFANCPTIEC YC+K+GHIL+NCPT PPRPP H HK KFS K GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-84

81.5

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Query:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP
        SIGLAHYYQLHS LV+LNQ+  +SVNEYLAT LQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRA LLH NPLPSLDAAVQ ILFEEKRLGI+S+L 
Subjt:  SIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLLHCNPLPSLDAAVQVILFEEKRLGIISALP

Query:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK
        SDVALATTH R  NE+ FCKN KLHGHKFANCPTIEC YCHK+GHIL+NCPT PPRPPGH HK KFS K GS SVVA  T SDIT P + QL DL+DLLK
Subjt:  SDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTPSDITTPPNFQLNDLYDLLK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGATCCTGCCTCCTCTGACGTCACTATTCATGAGCCTACCACAAAAGATACCAAGTACATTGAAAAACTTGAGAATTGGGATAGCAAAAATCATCAAATCATCACC
TGGTTGGTCTATTGGTCTTGCTCACTATTATCAATTACACTCTAGACTAGTTAATTTAAACCAGGATAACAGAAAATCTGTGAATGAATACCTGGCTACCCTCCTGCAAC
CTATTTGGACTCAATTAGATCAGGCAAAAATCAGCCCTGATCATATTCGTCTCATCAAAGTCCTCATGGGACTCCGCCCAGAGTATGAATCTGTTCGTGCTACCCTGTTA
CACTGCAACCCACTACCATCTCTCGACGCTGCCGTTCAAGTGATTTTATTTGAGGAGAAACGTCTGGGCATCATCTCCGCTCTGCCCTCTGATGTTGCTCTAGCCACCAC
TCATCCTCGATCCACCAATGAGTCCACCTTCTGCAAAAACTACAAACTTCATGGTCATAAGTTTGCTAATTGTCCCACCATTGAGTGCATGTATTGTCATAAGAAAGGAC
ACATCTTGGAAAACTGTCCGACTTGCCCACCTCGCCCTCCTGGTCATCCACACAAATCCAAGTTCTCACCGAAGACGGGTTCTCCATCTGTTGTGGCTGTCACCACTCCA
TCTGACATCACCACACCTCCGAACTTTCAGTTAAATGATCTCTATGACTTACTAAAATAG

mRNA sequence

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Protein sequence

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MSILPPLTSLFMSLPQKIPSTLKNLRIGIAKIIKSSPGWSIGLAHYYQLHSRLVNLNQDNRKSVNEYLATLLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRATLL
HCNPLPSLDAAVQVILFEEKRLGIISALPSDVALATTHPRSTNESTFCKNYKLHGHKFANCPTIECMYCHKKGHILENCPTCPPRPPGHPHKSKFSPKTGSPSVVAVTTP
SDITTPPNFQLNDLYDLLK

PI0007178 (gene) of Melon (PI 482460) v1 genome