CuGenDBv2

Gene ID	PI0007229
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr11:14214633..14216561
RNA-Seq Expression	PI0007229
Synteny	PI0007229
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.8e-41

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RW+WFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.8e-41

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RW+WFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

2.4e-41

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LH+ELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RWKWFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

KAA0054554.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-41

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  TK+VDVEEMV MFLH+LAHD+KNRVI+REF+RS ETI RHFN+VLL ++ LH+ELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CTN RW+WFE     L G+ +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-41

74.55

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIHES+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN++ L ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFE
        CT+ RW+WFE
Subjt:  CTNLRWKWFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

8.8e-42

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RW+WFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

A0A5A7TXW1 Retrotransposon protein

8.8e-42

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RW+WFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

A0A5A7U476 Retrotransposon protein

1.2e-41

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN+VLL ++ LH+ELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CT+ RWKWFE     L G  +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

A0A5A7VHB0 Retrotransposon protein

6.8e-42

74.55

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIHES+LVCRQST+M RRCFAILCHLLRT +GL  T++VDVEEMV MFLH+LAHD+KNRVI+REF+RSGETI RHFN++ L ++ LHDELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFE
        CT+ RW+WFE
Subjt:  CTNLRWKWFE

A0A5D3D9Z3 Retrotransposon protein

5.2e-42

64.29

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        MIH S+LVCRQST+M RRCFAILCHLLRT +GL  TK+VDVEEMV MFLH+LAHD+KNRVI+REF+RS ETI RHFN+VLL ++ LH+ELLKKPQP  N 
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL
        CTN RW+WFE     L G+ +       DR R     GE+
Subjt:  CTNLRWKWFEAWALGLMGLTV-----MPDRMRSDVELGEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.4e-09

31.37

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Query:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA
        +++  N  C ++ +M +  F  LC LL+T   L  T  + +E  + +FL ++ H+++ R ++  F  SGETI RHFN VL  ++ +  +     QP  N+
Subjt:  MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNA

Query:  CT
         T
Subjt:  CT

Sequences

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CDS sequence

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ATGATCCATGAGTCCAACTTAGTATGTCGTCAAAGTACTAAAATGGGCAGAAGATGTTTTGCCATTCTATGCCACCTACTTAGGACCACTTCTGGATTAGCATTGACGAA
AATCGTCGATGTCGAGGAGATGGTCACCATGTTTCTGCACGTACTGGCGCATGACATGAAGAATCGAGTGATCAAAAGGGAGTTTGTGCGGTCTGGTGAGACAATTTTAC
GACATTTCAACATAGTCCTGTTGACAATGCTATGCCTGCATGATGAGTTGTTGAAAAAACCGCAACCAGAAATGAACGCATGCACAAATCTCCGATGGAAGTGGTTTGAG
GCTTGGGCCTTGGGCCTAATGGGCTTGACGGTTATGCCAGATCGCATGCGTTCTGATGTTGAGTTAGGCGAGCTAGTGCTGTACGCGAGCTTGATCAGTCAACTGAATGA
AGAGTTGGCGAGCTTGGTGTTGAATGAAGTGTGCGGCGAAGCAAGTATACTTCTGTAG

mRNA sequence

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Protein sequence

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MIHESNLVCRQSTKMGRRCFAILCHLLRTTSGLALTKIVDVEEMVTMFLHVLAHDMKNRVIKREFVRSGETILRHFNIVLLTMLCLHDELLKKPQPEMNACTNLRWKWFE
AWALGLMGLTVMPDRMRSDVELGELVLYASLISQLNEELASLVLNEVCGEASILL

PI0007229 (gene) of Melon (PI 482460) v1 genome