; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0007292 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007292
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:18029390..18030855
RNA-Seq ExpressionPI0007292
SyntenyPI0007292
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.9e-5965.73Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  + +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++   +++E K     SPS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5865.73Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA S+ +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL  P ++EK  ++  L +  N KNE  +E   ++PS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-5966.29Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+NQ+  QA S+ +NQG+NLED++KALA +T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++   L+  N KNE  +EN  ++PS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-5865.03Show/hide
Query:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDP  NTYN+GWRDNPNLRWGN+NQ+  QA S+ +NQG+NLED++KALAT+T+SFQ 
Subjt:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K  +
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.1e-5864.67Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  QA  + +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+  EE  E N+SS + K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032915.3e-5964.67Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  QA  + +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+  EE  E N+SS + K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR

A0A5A7VE49 Retrotransposon gag protein2.4e-5966.29Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+NQ+  QA S+ +NQG+NLED++KALA +T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++   L+  N KNE  +EN  ++PS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

A0A5A7VQ60 Retrotransposon gag protein1.5e-5865.03Show/hide
Query:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDP  NTYN+GWRDNPNLRWGN+NQ+  QA S+ +NQG+NLED++KALAT+T+SFQ 
Subjt:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL  P + E+KV S P  L  +N+  EE  E N S  + K  +
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKNEENKENNASSPSLKGTR

A0A5D3CRR8 Retrotransposon gag protein6.9e-5965.73Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA S+ +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL  P ++EK  ++  L +  N KNE  +E   ++PS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

E5GBZ4 Retrotransposon gag protein1.4e-5965.73Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+  QA  + +NQG+NLED++KALAT+T+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++   +++E K     SPS
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCGAAATGTGGAGTATGTGGGCTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGTAATACTTACAACGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCGCACAAG
CAACTTCTTCTTTAAACAATCAAGGTAGTAATTTGGAGGACTTGGTAAAAGCTCTTGCTACTAGCACAATTTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCAATTA
ACAAATGCAATAAGCAAGTTAGAGGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCACGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCC
AAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAATGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAGGAACCAGGG
ATCGAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCGAAATGTGGAGTATGTGGGCTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGTAATACTTACAACGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCGCACAAG
CAACTTCTTCTTTAAACAATCAAGGTAGTAATTTGGAGGACTTGGTAAAAGCTCTTGCTACTAGCACAATTTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCAATTA
ACAAATGCAATAAGCAAGTTAGAGGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCACGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCC
AAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAATGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAGGAACCAGGG
ATCGAGCCTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPAQATSSLNNQGSNLEDLVKALATSTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKNEENKENNASSPSLKGTRDRA