CuGenDBv2

Gene ID	PI0007372
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr02:17793348..17793875
RNA-Seq Expression	PI0007372
Synteny	PI0007372
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA+QTVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLN+MV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.7e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

A0A5A7TU93 Gag/pol protein

2.7e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

A0A5A7TWB9 Gag/pol protein

2.7e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

A0A5A7V6N0 Gag/pol protein

2.7e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA+QTVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLN+MV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

A0A5D3CPJ6 Gag/pol protein

2.7e-65

77.59

Show/hide

Query:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF
        +EECP  P  NA++TVR+ Y+RW KAN+ AR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H A+KY+YNARM EG SVREHVLNMMV F
Subjt:  MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR
        NVAE NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK  EANVA S R
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGACACGGCCCGAGTCTACATTTTGGCTAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTTACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACAAAG
CTATTAAGTACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCAACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAGAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGCAAACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAAGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTTAG

mRNA sequence

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Protein sequence

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MEECPPSPVRNASQTVRDAYDRWTKANDTARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHKAIKYVYNARMKEGQSVREHVLNMMVQFNVAETNGAVI
DEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEREANVAHSKRF

PI0007372 (gene) of Melon (PI 482460) v1 genome