CuGenDBv2

Gene ID	PI0007433
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr11:23760033..23760314
RNA-Seq Expression	PI0007433
Synteny	PI0007433
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QKK51128.1 ribosomal protein L23 [Tropaeolum majus]

5.1e-41

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHW ELFFGVKVIAMNSHRLPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

YP_009231201.1 50S ribosomal protein L23 [Dipteronia sinensis]

5.1e-41

92.47

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

YP_009468788.1 ribosomal protein L23 [Koelreuteria paniculata]

6.7e-41

92.47

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

YP_009765631.1 ribosomal protein L23 [Copaifera officinalis]

3.9e-41

93.55

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQPSYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

YP_010028455.1 ribosomal protein L23 [Ventilago leiocarpa]

3.9e-41

93.55

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Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQPSYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A1X9QHF7 50S ribosomal protein L23

2.5e-41

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

A0A6H0CC46 50S ribosomal protein L23, chloroplastic

2.5e-41

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

A0A6H0E3B4 50S ribosomal protein L23, chloroplastic

1.9e-41

93.55

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQPSYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

A0A7G7XSR1 50S ribosomal protein L23, chloroplastic

2.5e-41

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

A0A7M1YAK5 50S ribosomal protein L23, chloroplastic

1.9e-41

93.55

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQPSYS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

1.9e-43

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Q09MB3 50S ribosomal protein L23, chloroplastic

3.3e-43

91.4

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSH+LPRKGRRMGPI+ HTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

5.7e-43

91.4

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGP +GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.5e-43

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.5e-43

92.47

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVES STRTEIKHWVELFFGVKVIAMNSHRLP KGRRMGPI+GHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

7.6e-43

90.32

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYT NVES STRTEIKHWVELFFGVKVIAMNSHRLP K +RMGPILGHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

ATCG01300.1 ribosomal protein L23

7.6e-43

90.32

Show/hide

Query:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYT NVES STRTEIKHWVELFFGVKVIAMNSHRLP K +RMGPILGHTMHYRRMIITLQP YS  PLRKKRT
Subjt:  MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAAACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGAGAAAGGGTAGAAGAATGGGACCTATTCTAGGACATACGATGCATTACAGAC
GTATGATCATTACGCTTCAACCGAGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDGIKYAVFTNKSIRLLGKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPILGHTMHYRRMIITLQPSYSTRPLRKKRT

PI0007433 (gene) of Melon (PI 482460) v1 genome