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PI0007467 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007467
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Genome locationchr04:16118625..16119350
RNA-Seq ExpressionPI0007467
SyntenyPI0007467
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-4752.36Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + ITRKGKE+VV NNHITV+++D  KEK    QRT AFD++   + RT VFERLSMTE ER+  QST NLDR   F+RLT   KKEK  CQ  + T+PS 
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG---------------------SEEEEGETSCHHVTNI
        F+RL +A KKNVQ P   IF+RL   G HV TGSS+  KKKE TS   VW  IKH D+E+C G                     S++ EGE SCHH+T +
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG---------------------SEEEEGETSCHHVTNI

Query:  KESEIETLEEDA
        +E EIE  EEDA
Subjt:  KESEIETLEEDA

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]2.2e-4650.23Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + ITRKGK++VV NNHITV+++D  +EK   +QRT  FD++   + R  VFERLSMTEA+R+  QST NLDR   F+RLT  FK+EK  CQ S+ TKPS 
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG--------------------------SEEEEGETSCH
        F+RL +  KKN Q P A I +RLG  G HV T SS+  KKKE TS   VW  IKH  +E+C G                          SE+ EGE SCH
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG--------------------------SEEEEGETSCH

Query:  HVTNIKESEIETLEEDA
        H+T ++E EIETLEEDA
Subjt:  HVTNIKESEIETLEEDA

KAA0058831.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]8.9e-4853.55Show/hide
Query:  ITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPSTFK
        ITRKGKE+VV NNHIT+E++D  +EK   SQRT  FD++R  +    VFERLSMTE +R+  Q T NL+R  VF+RLTT F+KEK+TCQ S  T+ S F+
Subjt:  ITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPSTFK

Query:  RLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIEN-------CL----------------GSEEEEGETSCHHVTNI
        RL V  KKNVQ P A IF+RL  RGPHV TGS +   KKE TS T +W+ IKH D EN       C                 GS++ EGETSCHH+T I
Subjt:  RLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIEN-------CL----------------GSEEEEGETSCHHVTNI

Query:  KESEIETLEED
        +ESE++TLEED
Subjt:  KESEIETLEED

KAA0065858.1 uncharacterized protein E6C27_scaffold538G00050 [Cucumis melo var. makuwa]1.8e-4553.27Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + IT+KGKE+VV NN IT++++D  +EK   SQRT AFD++   +    VFERLSMT+AER+  QST NLDR   F+RLT  FKKEK  CQ S+ T+P T
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENC--------LGSEEEEGETSCHHVTNIKESEIETLEEDA
        F+RL +A KKN Q P A I +RL    P V T SS+  KKKE TS   VW  IKH D+E+C          SE+ EGE SCHH T ++E EIET EEDA
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENC--------LGSEEEEGETSCHHVTNIKESEIETLEEDA

KAA0067354.1 uncharacterized protein E6C27_scaffold179G00670 [Cucumis melo var. makuwa]9.2e-4550.69Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        +HITRKGKE+VV +NHITVE++D  +EK   SQRTLAF ++R  +  T +FERLSMTE +R+  QS  NLD    F+RLTT FKK+K TCQ S  T+PS+
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCI-----------------------KHKDIENCL---GSEEEEGETSCH
        F+RL +A KKNVQ PHA IF+ LG  GPH+ T SS+  KKKE TS   V   +                       +H  I   L    SE+EE ETSCH
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCI-----------------------KHKDIENCL---GSEEEEGETSCH

Query:  HVTNIKESEIETLEEDA
        H+T +KE EI T EEDA
Subjt:  HVTNIKESEIETLEEDA

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein5.6e-4852.36Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + ITRKGKE+VV NNHITV+++D  KEK    QRT AFD++   + RT VFERLSMTE ER+  QST NLDR   F+RLT   KKEK  CQ  + T+PS 
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG---------------------SEEEEGETSCHHVTNI
        F+RL +A KKNVQ P   IF+RL   G HV TGSS+  KKKE TS   VW  IKH D+E+C G                     S++ EGE SCHH+T +
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG---------------------SEEEEGETSCHHVTNI

Query:  KESEIETLEEDA
        +E EIE  EEDA
Subjt:  KESEIETLEEDA

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.1e-4650.23Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + ITRKGK++VV NNHITV+++D  +EK   +QRT  FD++   + R  VFERLSMTEA+R+  QST NLDR   F+RLT  FK+EK  CQ S+ TKPS 
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG--------------------------SEEEEGETSCH
        F+RL +  KKN Q P A I +RLG  G HV T SS+  KKKE TS   VW  IKH  +E+C G                          SE+ EGE SCH
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLG--------------------------SEEEEGETSCH

Query:  HVTNIKESEIETLEEDA
        H+T ++E EIETLEEDA
Subjt:  HVTNIKESEIETLEEDA

A0A5A7UZB3 Gypsy-like retrotransposase4.3e-4853.55Show/hide
Query:  ITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPSTFK
        ITRKGKE+VV NNHIT+E++D  +EK   SQRT  FD++R  +    VFERLSMTE +R+  Q T NL+R  VF+RLTT F+KEK+TCQ S  T+ S F+
Subjt:  ITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPSTFK

Query:  RLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIEN-------CL----------------GSEEEEGETSCHHVTNI
        RL V  KKNVQ P A IF+RL  RGPHV TGS +   KKE TS T +W+ IKH D EN       C                 GS++ EGETSCHH+T I
Subjt:  RLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIEN-------CL----------------GSEEEEGETSCHHVTNI

Query:  KESEIETLEED
        +ESE++TLEED
Subjt:  KESEIETLEED

A0A5A7VJ26 Uncharacterized protein4.4e-4550.69Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        +HITRKGKE+VV +NHITVE++D  +EK   SQRTLAF ++R  +  T +FERLSMTE +R+  QS  NLD    F+RLTT FKK+K TCQ S  T+PS+
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCI-----------------------KHKDIENCL---GSEEEEGETSCH
        F+RL +A KKNVQ PHA IF+ LG  GPH+ T SS+  KKKE TS   V   +                       +H  I   L    SE+EE ETSCH
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCI-----------------------KHKDIENCL---GSEEEEGETSCH

Query:  HVTNIKESEIETLEEDA
        H+T +KE EI T EEDA
Subjt:  HVTNIKESEIETLEEDA

A0A5D3D7W3 Uncharacterized protein8.9e-4653.27Show/hide
Query:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST
        + IT+KGKE+VV NN IT++++D  +EK   SQRT AFD++   +    VFERLSMT+AER+  QST NLDR   F+RLT  FKKEK  CQ S+ T+P T
Subjt:  MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPST

Query:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENC--------LGSEEEEGETSCHHVTNIKESEIETLEEDA
        F+RL +A KKN Q P A I +RL    P V T SS+  KKKE TS   VW  IKH D+E+C          SE+ EGE SCHH T ++E EIET EEDA
Subjt:  FKRLVVANKKNVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENC--------LGSEEEEGETSCHHVTNIKESEIETLEEDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATAACTAGAAAGGGGAAGGAAAGAGTGGTTGGTAACAATCATATAACTGTAGAGGATATCGATGATACGAAAGAAAAAGGAAGTGGTAGTCAGAGAACCTTAGC
GTTTGACCAAATGAGATTATTACTTTTGCGCACCCTAGTATTCGAAAGACTAAGCATGACGGAGGCAGAGAGAGAGAGTCAACAGTCAACGCCTAACCTTGATCGATGTT
TAGTTTTTCGAAGGCTAACTACGCCCTTTAAAAAGGAGAAAAACACATGTCAGGTTTCATTGGCTACAAAACCATCAACCTTTAAAAGGCTAGTCGTGGCTAACAAGAAA
AATGTACAAGCACCCCATGCATCAATTTTCGACCGTCTTGGGTATCGAGGCCCACATGTCAACACTGGTTCTAGTGTAGGTGTAAAGAAGAAGGAACCGACATCTCACAC
GCCAGTTTGGTACTGCATTAAGCATAAAGACATTGAGAATTGTCTTGGCTCAGAAGAAGAAGAAGGTGAAACTTCATGTCATCACGTCACCAATATCAAAGAATCGGAGA
TTGAAACTCTTGAAGAGGATGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATATAACTAGAAAGGGGAAGGAAAGAGTGGTTGGTAACAATCATATAACTGTAGAGGATATCGATGATACGAAAGAAAAAGGAAGTGGTAGTCAGAGAACCTTAGC
GTTTGACCAAATGAGATTATTACTTTTGCGCACCCTAGTATTCGAAAGACTAAGCATGACGGAGGCAGAGAGAGAGAGTCAACAGTCAACGCCTAACCTTGATCGATGTT
TAGTTTTTCGAAGGCTAACTACGCCCTTTAAAAAGGAGAAAAACACATGTCAGGTTTCATTGGCTACAAAACCATCAACCTTTAAAAGGCTAGTCGTGGCTAACAAGAAA
AATGTACAAGCACCCCATGCATCAATTTTCGACCGTCTTGGGTATCGAGGCCCACATGTCAACACTGGTTCTAGTGTAGGTGTAAAGAAGAAGGAACCGACATCTCACAC
GCCAGTTTGGTACTGCATTAAGCATAAAGACATTGAGAATTGTCTTGGCTCAGAAGAAGAAGAAGGTGAAACTTCATGTCATCACGTCACCAATATCAAAGAATCGGAGA
TTGAAACTCTTGAAGAGGATGCATAA
Protein sequenceShow/hide protein sequence
MHITRKGKERVVGNNHITVEDIDDTKEKGSGSQRTLAFDQMRLLLLRTLVFERLSMTEAERESQQSTPNLDRCLVFRRLTTPFKKEKNTCQVSLATKPSTFKRLVVANKK
NVQAPHASIFDRLGYRGPHVNTGSSVGVKKKEPTSHTPVWYCIKHKDIENCLGSEEEEGETSCHHVTNIKESEIETLEEDA