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PI0007508 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007508
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:21061199..21062202
RNA-Seq ExpressionPI0007508
SyntenyPI0007508
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]5.0e-1763.29Show/hide
Query:  SLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLKSMAISQVNATSSSLQALRQL
        S YNQI  TLD++A NNEEWD+D FD+ RGGRG+N EG+D+NV+V  QGQMT MNNLL+ M   QVNA SSS Q+++Q+
Subjt:  SLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLKSMAISQVNATSSSLQALRQL

KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]4.8e-2055.88Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCR---GGRGRNNEGMDKNVVVALQGQMTVMNN
        +VKAC H+GI KC+LME FYF L++  QQTVD VFV G+L++ YNQ KT LDTM SN++E  +D   + +     RGR +EGMD+N +V LQGQ+T MN 
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCR---GGRGRNNEGMDKNVVVALQGQMTVMNN

Query:  LL
        LL
Subjt:  LL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]6.5e-2551.59Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDN------CRGGRGRNNEGMDKNVVVALQGQMTV
        M+K CPH+ IP+C+LME FYFGL+K T Q+ + VF  GML+S YNQIK  LDTMASN++EW ++ F +       +G RGR  +G+D +++VALQGQ+  
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDN------CRGGRGRNNEGMDKNVVVALQGQMTV

Query:  MNNLLKSMAISQVNATSSSLQALRQL
        M N+L+SMA+ QVN   SS+Q ++Q+
Subjt:  MNNLLKSMAISQVNATSSSLQALRQL

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]1.5e-2958.33Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLK
        +VKACP +GIP+C+ MEVFYFGL+K T Q V+ +FV GML+S YNQIK TLD+M++N++EWD+  F +    RGR  EG+DK+VVV LQGQM  MNNLL+
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLK

Query:  SMAISQVNATSSSLQALRQL
        SM +SQVNA ++ + A++Q+
Subjt:  SMAISQVNATSSSLQALRQL

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]2.3e-2248.41Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDF---DNCRGGR---GRNNEGMDKNVVVALQGQMTV
        M+K C H+ I  C+++E FYFGL++ TQQ VDAVF+ GML+   N IKTTLD M SN++EW +++F   +  +G R   GR N+G + N ++ LQ Q+T 
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDF---DNCRGGR---GRNNEGMDKNVVVALQGQMTV

Query:  MNNLLKSMAISQVNATSSSLQALRQL
        MN LL+SMA+SQ+NA  SS++ + Q+
Subjt:  MNNLLKSMAISQVNATSSSLQALRQL

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein7.2e-3058.33Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLK
        +VKACP +GIP+C+ MEVFYFGL+K T Q V+ +FV GML+S YNQIK TLD+M++N++EWD+  F +    RGR  EG+DK+VVV LQGQM  MNNLL+
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLK

Query:  SMAISQVNATSSSLQALRQL
        SM +SQVNA ++ + A++Q+
Subjt:  SMAISQVNATSSSLQALRQL

A0A0A0L0Y4 Uncharacterized protein1.1e-2248.41Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDF---DNCRGGR---GRNNEGMDKNVVVALQGQMTV
        M+K C H+ I  C+++E FYFGL++ TQQ VDAVF+ GML+   N IKTTLD M SN++EW +++F   +  +G R   GR N+G + N ++ LQ Q+T 
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDF---DNCRGGR---GRNNEGMDKNVVVALQGQMTV

Query:  MNNLLKSMAISQVNATSSSLQALRQL
        MN LL+SMA+SQ+NA  SS++ + Q+
Subjt:  MNNLLKSMAISQVNATSSSLQALRQL

A0A5A7TUE1 Uncharacterized protein2.3e-2055.88Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCR---GGRGRNNEGMDKNVVVALQGQMTVMNN
        +VKAC H+GI KC+LME FYF L++  QQTVD VFV G+L++ YNQ KT LDTM SN++E  +D   + +     RGR +EGMD+N +V LQGQ+T MN 
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCR---GGRGRNNEGMDKNVVVALQGQMTVMNN

Query:  LL
        LL
Subjt:  LL

A0A5D3CC26 Uncharacterized protein3.1e-2551.59Show/hide
Query:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDN------CRGGRGRNNEGMDKNVVVALQGQMTV
        M+K CPH+ IP+C+LME FYFGL+K T Q+ + VF  GML+S YNQIK  LDTMASN++EW ++ F +       +G RGR  +G+D +++VALQGQ+  
Subjt:  MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDN------CRGGRGRNNEGMDKNVVVALQGQMTV

Query:  MNNLLKSMAISQVNATSSSLQALRQL
        M N+L+SMA+ QVN   SS+Q ++Q+
Subjt:  MNNLLKSMAISQVNATSSSLQALRQL

A0A5D3CSC7 Uncharacterized protein2.4e-1763.29Show/hide
Query:  SLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLKSMAISQVNATSSSLQALRQL
        S YNQI  TLD++A NNEEWD+D FD+ RGGRG+N EG+D+NV+V  QGQMT MNNLL+ M   QVNA SSS Q+++Q+
Subjt:  SLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLKSMAISQVNATSSSLQALRQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAAGCATGCCCCCACAATGGCATTCCTAAATGCATATTGATGGAGGTGTTCTACTTTGGTTTGAACAAAGCGACGCAGCAGACTGTTGATGCTGTGTTTGTAAG
TGGTATGCTTAAAAGTTTATACAACCAAATAAAGACGACGTTGGATACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGATAATTGCCGAGGAGGACGAG
GAAGAAACAATGAAGGAATGGATAAGAACGTCGTGGTGGCATTGCAAGGACAAATGACAGTGATGAACAACCTTTTGAAATCAATGGCAATATCGCAGGTTAATGCTACC
AGCAGCTCTTTGCAGGCGTTGAGGCAGTTGGCCAGCGATTTCTCTAGAAGGCCACAAGGATCTCTCCCTAGCAATATAGAACACCTAATTAGGCAGGAGGATTCAGAAAA
GAGAAGTGTCACGGTGACACTTCAAAGCGGAAGGAACTTGACCATCCGCGATCTTGAATCTGAACATAGCAATTCCACTTCTCACTCTAATGTCGAGATCAGTAGCTCAA
GTAACAATTCTAATCCTTTGAATTTCTCTTTAACTAATAACGTTTATTCCTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAAGCATGCCCCCACAATGGCATTCCTAAATGCATATTGATGGAGGTGTTCTACTTTGGTTTGAACAAAGCGACGCAGCAGACTGTTGATGCTGTGTTTGTAAG
TGGTATGCTTAAAAGTTTATACAACCAAATAAAGACGACGTTGGATACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGATAATTGCCGAGGAGGACGAG
GAAGAAACAATGAAGGAATGGATAAGAACGTCGTGGTGGCATTGCAAGGACAAATGACAGTGATGAACAACCTTTTGAAATCAATGGCAATATCGCAGGTTAATGCTACC
AGCAGCTCTTTGCAGGCGTTGAGGCAGTTGGCCAGCGATTTCTCTAGAAGGCCACAAGGATCTCTCCCTAGCAATATAGAACACCTAATTAGGCAGGAGGATTCAGAAAA
GAGAAGTGTCACGGTGACACTTCAAAGCGGAAGGAACTTGACCATCCGCGATCTTGAATCTGAACATAGCAATTCCACTTCTCACTCTAATGTCGAGATCAGTAGCTCAA
GTAACAATTCTAATCCTTTGAATTTCTCTTTAACTAATAACGTTTATTCCTCGTAG
Protein sequenceShow/hide protein sequence
MVKACPHNGIPKCILMEVFYFGLNKATQQTVDAVFVSGMLKSLYNQIKTTLDTMASNNEEWDEDDFDNCRGGRGRNNEGMDKNVVVALQGQMTVMNNLLKSMAISQVNAT
SSSLQALRQLASDFSRRPQGSLPSNIEHLIRQEDSEKRSVTVTLQSGRNLTIRDLESEHSNSTSHSNVEISSSSNNSNPLNFSLTNNVYSS