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PI0007509 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007509
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:23592280..23592777
RNA-Seq ExpressionPI0007509
SyntenyPI0007509
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.0e-1551.89Show/hide
Query:  GSNVPCGFE-PFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRA
        GSNVP  F      DD  + DI  MYSQ   MSPD++ G R  +++E +  SSGSKRKQG  + E +E+I SA+E+GNDQLKAIA WPKE+R  +   RA
Subjt:  GSNVPCGFE-PFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRA

Query:  AVVTQL
         V+ QL
Subjt:  AVVTQL

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-1549.52Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA D V + D S MYS    MSPDD++ +R  R +E R  SSGSKRK+  H  ++ +I+ +A+EYGN+QL  IAEWP  QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        +V QL
Subjt:  VVTQL

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-1751.43Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA DDVS+ D   MYS    MSPDD++ +R  R +E R  SSGSKRK+  H  ++ +I+ +AMEYGN+QL  IAEWP  QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        +V QL
Subjt:  VVTQL

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-1547.62Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA +  S+ D   MYS+   MSPD+++G+R  R +EGR  SSGSK+K+G    ++ +I+ +A+EYGN+QL  IAEW   QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        VV QL
Subjt:  VVTQL

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]6.8e-2054.29Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G+E F+ DD ++M+I  MYSQ   M  DD++G+RP+RS EGR GSSGSKRKQG    E +EII + ME+ ND+LKAI EW   QR+D       
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        VV QL
Subjt:  VVTQL

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI14.9e-1651.89Show/hide
Query:  GSNVPCGFE-PFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRA
        GSNVP  F      DD  + DI  MYSQ   MSPD++ G R  +++E +  SSGSKRKQG  + E +E+I SA+E+GNDQLKAIA WPKE+R  +   RA
Subjt:  GSNVPCGFE-PFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRA

Query:  AVVTQL
         V+ QL
Subjt:  AVVTQL

A0A5A7SWD8 Retrotransposon protein1.9e-1549.52Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA D V + D S MYS    MSPDD++ +R  R +E R  SSGSKRK+  H  ++ +I+ +A+EYGN+QL  IAEWP  QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        +V QL
Subjt:  VVTQL

A0A5A7TYQ6 Retrotransposon protein2.0e-1751.43Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA DDVS+ D   MYS    MSPDD++ +R  R +E R  SSGSKRK+  H  ++ +I+ +AMEYGN+QL  IAEWP  QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        +V QL
Subjt:  VVTQL

A0A5A7TZA5 Retrotransposon protein3.2e-1547.62Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G++ FA +  S+ D   MYS+   MSPD+++G+R  R +EGR  SSGSK+K+G    ++ +I+ +A+EYGN+QL  IAEW   QR+D   TR  
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        VV QL
Subjt:  VVTQL

A0A5A7V469 Retrotransposon protein3.3e-2054.29Show/hide
Query:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA
        GSN P G+E F+ DD ++M+I  MYSQ   M  DD++G+RP+RS EGR GSSGSKRKQG    E +EII + ME+ ND+LKAI EW   QR+D       
Subjt:  GSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAGSSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAA

Query:  VVTQL
        VV QL
Subjt:  VVTQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTATGTTCGATTCCTGTACGCAATGAAACTGAGAAAGTGTTTGTATTTTTTTGCACAGAGTCACCCCGCAGCAAAGGGTCTTCTGAACAAGTCGTTTCCATACT
ACGACGAACTGTCATATGTCTTCAGGAAAGACCGCGCTACAGGACAACGCGCGGAGTCATTCGCAGATGCGGTTCCAATGTGCCATGTGGTTTTGAGCCATTTGCAGGTG
ACGATGTTTCGAATATGGACATCTCATGCATGTACAGCCAGGTACATCCCATGTCACCCGATGACGTAGTGGGATCACGTCCTGAACGGTCCAATGAGGGTAGGGCGGGT
TCGAGCGGATCGAAAAGGAAGCAGGGATGCCATAATGCAGAAGCTTTGGAAATCATTAGCAGCGCTATGGAATATGGGAATGACCAGCTGAAGGCTATTGCAGAATGGCC
GAAAGAACAACGGAAAGACAAATATACAACCCGTGCAGCAGTTGTTACCCAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTATGTTCGATTCCTGTACGCAATGAAACTGAGAAAGTGTTTGTATTTTTTTGCACAGAGTCACCCCGCAGCAAAGGGTCTTCTGAACAAGTCGTTTCCATACT
ACGACGAACTGTCATATGTCTTCAGGAAAGACCGCGCTACAGGACAACGCGCGGAGTCATTCGCAGATGCGGTTCCAATGTGCCATGTGGTTTTGAGCCATTTGCAGGTG
ACGATGTTTCGAATATGGACATCTCATGCATGTACAGCCAGGTACATCCCATGTCACCCGATGACGTAGTGGGATCACGTCCTGAACGGTCCAATGAGGGTAGGGCGGGT
TCGAGCGGATCGAAAAGGAAGCAGGGATGCCATAATGCAGAAGCTTTGGAAATCATTAGCAGCGCTATGGAATATGGGAATGACCAGCTGAAGGCTATTGCAGAATGGCC
GAAAGAACAACGGAAAGACAAATATACAACCCGTGCAGCAGTTGTTACCCAATTGTAG
Protein sequenceShow/hide protein sequence
MELCSIPVRNETEKVFVFFCTESPRSKGSSEQVVSILRRTVICLQERPRYRTTRGVIRRCGSNVPCGFEPFAGDDVSNMDISCMYSQVHPMSPDDVVGSRPERSNEGRAG
SSGSKRKQGCHNAEALEIISSAMEYGNDQLKAIAEWPKEQRKDKYTTRAAVVTQL