CuGenDBv2

Gene ID	PI0007537
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr07:6689068..6689331
RNA-Seq Expression	PI0007537
Synteny	PI0007537
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032476.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-38

93.02

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

KAA0038841.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-38

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

KAA0064694.1 polyprotein [Cucumis melo var. makuwa]

1.0e-38

93.02

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-38

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-38

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UXR6 Reverse transcriptase

4.8e-39

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

A0A5A7VBR9 Polyprotein

4.8e-39

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

A0A5D3BRZ6 Reverse transcriptase

4.8e-39

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

A0A5D3C4R1 Reverse transcriptase

4.8e-39

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

A0A5D3DBE0 Reverse transcriptase

4.8e-39

93.02

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD
        MKKWADKKRRPLEFRAGDQVLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGNTSYRVALPTW KI+PVIHVSNLKPYHQD++D
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAATGGGCAGATAAGAAACGCCGTCCCCTCGAGTTTCGGGCGGGAGACCAAGTCCTCATTAAACTGCGACCTGAACAAATCCGATTTCGAGGATGCAAAGACCA
ACGTCTCGTTAGGAAATACGAGGGACCTGTTGAAGTCCTCAAAAAGGTGGGAAACACATCCTACCGAGTGGCGTTACCCACGTGGACGAAAATACATCCAGTAATTCACG
TGAGTAACTTAAAACCCTACCATCAAGACTCCGATGACACGTGA

mRNA sequence

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Protein sequence

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MKKWADKKRRPLEFRAGDQVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWTKIHPVIHVSNLKPYHQDSDDT

PI0007537 (gene) of Melon (PI 482460) v1 genome