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PI0007544 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007544
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:29381808..29382413
RNA-Seq ExpressionPI0007544
SyntenyPI0007544
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.9e-7072Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK                 P+ + +T+ ED +YIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFDSAK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQE+ QSV+EY AT QPIWTQLD+ KI+PDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]9.3e-7273Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK  P   + G++  +  D +D+ DTT ED KYIE+LED D KNHQIITWLGNTSIP IHTQFDAFD+AK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQEV QSV+EY AT QPIWTQL++ KI+ DH+ LIKVLM LRPEYESVY ALLH NPL S D AIQKILFEEKRL I SS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]5.1e-7072Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK                 P+ + +T+ ED +YIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFDSAK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQEV QSV+EY AT QPIWTQL++ KI+PDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]7.1e-7271.78Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNI--DTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLS
        MR F IGRKLW IVTGD+TKP+K T    T  +++D+ A+  D +  +TT ED KYIE+LED DSKNHQIITWLGNTSIPAIHTQ D+FD+AK LWDFL+
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNI--DTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLS

Query:  IRFQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVS
         RFQSIGL HYYQL+S L++LNQEV QSV+EY AT QPIWTQLD+TKINPDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVS
Subjt:  IRFQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVS

Query:  SM
        ++
Subjt:  SM

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]9.9e-7475.5Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK TP   T  E++D D   V   +TT E  KYIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFD+AK LWDFLS R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQE  QSV+EY AT QPIWTQLD+ KINP+H+RLIKVLM LRPEYESV  ALLH NPL S DAAIQ+ILFEE RL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.5e-7072Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK                 P+ + +T+ ED +YIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFDSAK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQEV QSV+EY AT QPIWTQL++ KI+PDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

A0A1S4E0Y9 uncharacterized protein LOC1079914633.4e-7271.78Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNI--DTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLS
        MR F IGRKLW IVTGD+TKP+K T    T  +++D+ A+  D +  +TT ED KYIE+LED DSKNHQIITWLGNTSIPAIHTQ D+FD+AK LWDFL+
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNI--DTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLS

Query:  IRFQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVS
         RFQSIGL HYYQL+S L++LNQEV QSV+EY AT QPIWTQLD+TKINPDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVS
Subjt:  IRFQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVS

Query:  SM
        ++
Subjt:  SM

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-947.2e-7071.5Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK                 P+ + +T+ ED +YIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFDSAK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQE+ QSV+EY AT QPIWTQLD+ KI+PDH+RLIKVLM LRPEYE V  ALLH NPL S DAA+Q+ILFEEKRL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

A0A5A7UKE6 Integrase, catalytic core4.5e-7273Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK  P   + G++  +  D +D+ DTT ED KYIE+LED D KNHQIITWLGNTSIP IHTQFDAFD+AK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQEV QSV+EY AT QPIWTQL++ KI+ DH+ LIKVLM LRPEYESVY ALLH NPL S D AIQKILFEEKRL I SS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-7072Show/hide
Query:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR
        MR F IGRKLW IVTGD+TKPVK                 P+ + +T+ ED +YIE+LED DSKNHQIITWLGNTSIPAIHTQFDAFDSAK LWDFL  R
Subjt:  MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIR

Query:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM
        FQSIGL HYYQLHS LVSLNQE+ QSV+EY AT QPIWTQLD+ KI+PDH+RLIKVLM LRPEYESV  ALLH NPL S DAA+Q+ILFEEKRL IVSS+
Subjt:  FQSIGLVHYYQLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGGTTTTTTATAGGTAGAAAGTTATGGTGCATTGTTACAGGAGATGTTACCAAACCTGTCAAAAACACCCCTTCAGCGATTACTATCGGTGAGGATGTTGATGA
TGATGCCGATCCTGTTGATAACATTGATACAACTGAAGAGGATGCCAAGTATATTGAACAACTTGAGGACAGAGATAGCAAAAATCATCAAATCATCACCTGGTTAGGTA
ACACTTCTATTCCAGCTATTCATACCCAGTTTGATGCATTTGATTCTGCAAAAGTACTTTGGGATTTTCTATCCATACGTTTTCAATCTATTGGTCTTGTCCATTATTAT
CAACTACACTCTTGGCTTGTTAGTCTCAACCAGGAGGTCGAGCAATCTGTGAGCGAATATTTTGCCACTTTTCAACCTATTTGGACTCAGTTAGATCGGACAAAAATCAA
CCCTGATCATCTCCGCCTCATAAAAGTCCTCATGAGACTCCGCCCAGAATATGAATCAGTTTATGTTGCTCTGTTACATCATAACCCTTTGTCATCCTCAGATGCCGCCA
TCCAGAAAATTTTGTTTGAAGAGAAAAGACTTGCCATTGTCTCCTCCATGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGGTTTTTTATAGGTAGAAAGTTATGGTGCATTGTTACAGGAGATGTTACCAAACCTGTCAAAAACACCCCTTCAGCGATTACTATCGGTGAGGATGTTGATGA
TGATGCCGATCCTGTTGATAACATTGATACAACTGAAGAGGATGCCAAGTATATTGAACAACTTGAGGACAGAGATAGCAAAAATCATCAAATCATCACCTGGTTAGGTA
ACACTTCTATTCCAGCTATTCATACCCAGTTTGATGCATTTGATTCTGCAAAAGTACTTTGGGATTTTCTATCCATACGTTTTCAATCTATTGGTCTTGTCCATTATTAT
CAACTACACTCTTGGCTTGTTAGTCTCAACCAGGAGGTCGAGCAATCTGTGAGCGAATATTTTGCCACTTTTCAACCTATTTGGACTCAGTTAGATCGGACAAAAATCAA
CCCTGATCATCTCCGCCTCATAAAAGTCCTCATGAGACTCCGCCCAGAATATGAATCAGTTTATGTTGCTCTGTTACATCATAACCCTTTGTCATCCTCAGATGCCGCCA
TCCAGAAAATTTTGTTTGAAGAGAAAAGACTTGCCATTGTCTCCTCCATGTTCTGA
Protein sequenceShow/hide protein sequence
MRRFFIGRKLWCIVTGDVTKPVKNTPSAITIGEDVDDDADPVDNIDTTEEDAKYIEQLEDRDSKNHQIITWLGNTSIPAIHTQFDAFDSAKVLWDFLSIRFQSIGLVHYY
QLHSWLVSLNQEVEQSVSEYFATFQPIWTQLDRTKINPDHLRLIKVLMRLRPEYESVYVALLHHNPLSSSDAAIQKILFEEKRLAIVSSMF