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PI0007619 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007619
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-(apurinic or apyrimidinic site) endonuclease
Genome locationchr02:15377312..15378666
RNA-Seq ExpressionPI0007619
SyntenyPI0007619
Gene Ontology termsGO:0016311 - dephosphorylation (biological process)
GO:0033683 - nucleotide-excision repair, DNA incision (biological process)
GO:0042644 - chloroplast nucleoid (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016791 - phosphatase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25597.1 DNA-(apurinic or apyrimidinic site) lyase [Cucumis melo var. makuwa]2.5e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

XP_011652215.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X5 [Cucumis sativus]2.5e-1266.67Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++ +     SN +  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

XP_016899623.1 PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X3 [Cucumis melo]2.5e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

XP_031739365.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucumis sativus]2.5e-1266.67Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++ +     SN +  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

XP_031739368.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X4 [Cucumis sativus]2.5e-1266.67Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++ +     SN +  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

TrEMBL top hitse value%identityAlignment
A0A0A0LF64 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-1266.67Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++ +     SN +  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

A0A1S3B7C7 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

A0A1S4DUI2 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

A0A5A7UEY3 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

A0A5D3DPL5 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-1282.61Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL
        S+RYGLGIS+HDGEGRVVMVEFDSFFLLNVYVPNS D LKRL+ ++
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKL

SwissProt top hitse value%identityAlignment
A1YES6 DNA-(apurinic or apyrimidinic site) endonuclease8.0e-0653.66Show/hide
Query:  IRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL
        + YG+G  +HD EGRV++ EFDSF L+  YVPN+   L RL
Subjt:  IRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL

P27695 DNA-(apurinic or apyrimidinic site) endonuclease8.0e-0653.66Show/hide
Query:  IRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL
        + YG+G  +HD EGRV++ EFDSF L+  YVPN+   L RL
Subjt:  IRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL

P37454 Exodeoxyribonuclease2.1e-0651.28Show/hide
Query:  YGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL
        YG+G+ +HD EGRV+ +EF++ F++ VY PNSR  L+R+
Subjt:  YGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRL

P45951 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic4.9e-1152.38Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYG G+S HD EGR+V  EFDSF+L+N YVPNS D LKRL+ ++       SN++  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

P51173 DNA-(apurinic or apyrimidinic site) endonuclease3.3e-0750Show/hide
Query:  HSIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDR-LKRL
        ++I +G+GI+KHD EGRV+ +E+D F+++N Y+PN+  R L+RL
Subjt:  HSIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDR-LKRL

Arabidopsis top hitse value%identityAlignment
AT2G41460.1 apurinic endonuclease-redox protein3.4e-1252.38Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES
        S+RYG G+S HD EGR+V  EFDSF+L+N YVPNS D LKRL+ ++       SN++  L++S
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNR-----SNNLNLLDES

AT2G41460.2 apurinic endonuclease-redox protein5.9e-1266.67Show/hide
Query:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKK
        S+RYG G+S HD EGR+V  EFDSF+L+N YVPNS D LKRL  K
Subjt:  SIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKK

AT3G60950.1 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase6.7e-0859.18Show/hide
Query:  IRYGLGI--SKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLA-KKLN
        +RYG G+  S HD EGR+V  EFDSF+L++ YVPNS D LK L   KLN
Subjt:  IRYGLGI--SKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLA-KKLN

AT3G61030.1 Calcium-dependent lipid-binding (CaLB domain) family protein6.7e-0859.18Show/hide
Query:  IRYGLGI--SKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLA-KKLN
        +RYG G+  S HD EGR+V  EFDSF+L++ YVPNS D LK L   KLN
Subjt:  IRYGLGI--SKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLA-KKLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTGGGTTATGCCTGCTTTAGCTATTGGGCTTCTTATTCTAGCCATGACTGGCCATTCAATTAGATATGGTTTAGGCATATCAAAACATGATGGTGAAGGGCGGGT
TGTGATGGTGGAGTTTGATTCATTTTTTTTATTGAATGTTTATGTTCCTAATTCTAGAGACAGATTAAAGAGACTGGCAAAGAAGTTGAACAGATCGAACAATTTGAATC
TTTTGGATGAATCTCCTTCCACTGCTTTTGCTTCTAACAATGTTTTGGGCAACGGGTTCAACAATGAGAGGAGAGGAGGAAGAGTAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTGGGTTATGCCTGCTTTAGCTATTGGGCTTCTTATTCTAGCCATGACTGGCCATTCAATTAGATATGGTTTAGGCATATCAAAACATGATGGTGAAGGGCGGGT
TGTGATGGTGGAGTTTGATTCATTTTTTTTATTGAATGTTTATGTTCCTAATTCTAGAGACAGATTAAAGAGACTGGCAAAGAAGTTGAACAGATCGAACAATTTGAATC
TTTTGGATGAATCTCCTTCCACTGCTTTTGCTTCTAACAATGTTTTGGGCAACGGGTTCAACAATGAGAGGAGAGGAGGAAGAGTAGAATAA
Protein sequenceShow/hide protein sequence
MSWVMPALAIGLLILAMTGHSIRYGLGISKHDGEGRVVMVEFDSFFLLNVYVPNSRDRLKRLAKKLNRSNNLNLLDESPSTAFASNNVLGNGFNNERRGGRVE