; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0007634 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007634
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:20365046..20366537
RNA-Seq ExpressionPI0007634
SyntenyPI0007634
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]5.9e-5271.63Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-5272.34Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKL AQ        +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-5171.63Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-5373.05Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPH NTYN+GWRDNLNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ +MKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]5.0e-5170.21Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDN NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ +MKQQM+ LT  ISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein4.9e-5271.63Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
A0A5D3CB46 Retrotransposon gag protein8.9e-5473.05Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPH NTYN+GWRDNLNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ +MKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
A0A5D3CFE7 Retrotransposon gag protein2.4e-5170.92Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD  NLRWGND Q   QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
A0A5D3CRR8 Retrotransposon gag protein1.7e-5272.34Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKL AQ        +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
E5GBZ4 Retrotransposon gag protein2.9e-5271.63Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
        SFQ EMKQQM+ LT AISK++GKGKLPAQP       +SLR
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPIMPTNKGLSLR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAATGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATATTAACACTTATAACGCCGGTTGGAGAGACAACCTTAATCTAAGATGGGGAAACGACAACCAAAGAC
CTGCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAGCAGATG
TCTCATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCTCAGCCAATCATGCCAACGAACAAGGGATTGAGCTTAAGACTCTCCCTCCCAACCTG
A
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAATGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATATTAACACTTATAACGCCGGTTGGAGAGACAACCTTAATCTAAGATGGGGAAACGACAACCAAAGAC
CTGCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAACAGCAGATG
TCTCATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCTCAGCCAATCATGCCAACGAACAAGGGATTGAGCTTAAGACTCTCCCTCCCAACCTG
A
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHINTYNAGWRDNLNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQM
SHLTNAISKLEGKGKLPAQPIMPTNKGLSLRLSLPT