CuGenDBv2

Gene ID	PI0007687
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Rubredoxin
Genome location	chr05:2493568..2495887
RNA-Seq Expression	PI0007687
Synteny	PI0007687
Gene Ontology terms	GO:0010207 - photosystem II assembly (biological process) GO:0022900 - electron transport chain (biological process) GO:0043448 - alkane catabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function)
InterPro domains	IPR018527 - Rubredoxin, iron-binding site IPR024934 - Rubredoxin-like domain IPR024935 - Rubredoxin domain

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33910.1 rubredoxin [Cucumis melo subsp. melo]

2.3e-60

92.86

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPPV   IP LQR SAARPISIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAVE EEEK DKRRLEE+FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE
        APGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE

KAG6599290.1 hypothetical protein SDJN03_09068, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-58

75.62

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPP+ VA P LQRS+AARPI IFT+NSIDVSKEDKPTSDDP+  +   VV  E  EEK+D+RR+EEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE---------KGCAYIWKLVVLLCSIPLRLFLAMI
        APGLPFEQLPEDWRCPTCGAAKSFFE         +G A++W LV+LLC +PL LFLAMI
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE---------KGCAYIWKLVVLLCSIPLRLFLAMI

XP_004139218.2 uncharacterized protein LOC101219075 [Cucumis sativus]

3.6e-58

91.41

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Query:  RFNFKPPV--TVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAV-EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY
        RFNFKPP+  T AIP L RSSAARPISIFT+NSIDVSKEDKPTSDDPNTP P PVVAV EEEEK DKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY
Subjt:  RFNFKPPV--TVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAV-EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY

Query:  PIAPGLPFEQLPEDWRCPTCGAAKSFFE
        PIAPGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  PIAPGLPFEQLPEDWRCPTCGAAKSFFE

XP_016901839.1 PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo]

2.3e-60

92.86

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPPV   IP LQR SAARPISIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAVE EEEK DKRRLEE+FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE
        APGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE

XP_038891199.1 rubredoxin [Benincasa hispida]

4.2e-59

86.47

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Query:  RFNFKPPVTV--------AIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVEEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAV
        RFNFKPP +         A+P LQRS+AARP SIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAV+EEEK DKRRLEEKFAVLNTGIYECRSCGHKFDEAV
Subjt:  RFNFKPPVTV--------AIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVEEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAV

Query:  GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
        GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJE4 Rubredoxin-like domain-containing protein

1.7e-58

91.41

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Query:  RFNFKPPV--TVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAV-EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY
        RFNFKPP+  T AIP L RSSAARPISIFT+NSIDVSKEDKPTSDDPNTP P PVVAV EEEEK DKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY
Subjt:  RFNFKPPV--TVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAV-EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTY

Query:  PIAPGLPFEQLPEDWRCPTCGAAKSFFE
        PIAPGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  PIAPGLPFEQLPEDWRCPTCGAAKSFFE

A0A1S4E0U3 uncharacterized protein LOC103499548

1.1e-60

92.86

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPPV   IP LQR SAARPISIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAVE EEEK DKRRLEE+FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE
        APGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE

A0A5A7VDM5 Rubredoxin

1.1e-60

92.86

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPPV   IP LQR SAARPISIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAVE EEEK DKRRLEE+FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE
        APGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE

A0A6J1KAE6 uncharacterized protein LOC111493686

9.3e-52

83.46

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVEE--EEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYP
        RFNFKPP+ VA P LQRS+AARPI IFT+NSIDVSKEDKPTSDDP+  +   VV  EE  EEK+D+RR+EEKFAVLNTGIYECRSCGHKFDEAVGDPTYP
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVEE--EEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYP

Query:  IAPGLPFEQLPEDWRCPTCGAAKSFFE
        IAPGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  IAPGLPFEQLPEDWRCPTCGAAKSFFE

E5GBR8 Rubredoxin

1.1e-60

92.86

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Query:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI
        RFNFKPPV   IP LQR SAARPISIFT+NSIDVSKEDKPTSDDPNTPSPPPVVAVE EEEK DKRRLEE+FAVLNTGIYECRSCGHKFDEAVGDPTYPI
Subjt:  RFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVE-EEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPI

Query:  APGLPFEQLPEDWRCPTCGAAKSFFE
        APGLPFEQLPEDWRCPTCGAAKSFFE
Subjt:  APGLPFEQLPEDWRCPTCGAAKSFFE

SwissProt top hits

e value

%identity

Alignment

P00270 Rubredoxin

1.5e-11

57.14

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Query:  IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK
        IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FEK
Subjt:  IYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK

P19500 Rubredoxin

2.2e-10

54.17

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Query:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK
        ++C  CG+ +D  VGDPT  I PG  FE LP+DW CP CG  K  FEK
Subjt:  YECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK

P24297 Rubredoxin

7.6e-11

58.7

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Query:  CRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK
        C+ CG+ +DE  GDP   I+PG  FE+LP+DW CP CGA KS FEK
Subjt:  CRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK

P58025 Rubredoxin 3

2.9e-10

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Query:  CRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
        C  CG+++D A GDP   I PG  FE LPEDW CP CG  KSFFE
Subjt:  CRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE

Q9FDN6 High molecular weight rubredoxin

1.3e-10

42.5

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Query:  TPSPPPVVAVEEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK
        TP   P   V  E+  DK         L +  Y+C  C + +D   GDP + IAPG PF  LPEDW CP CGA K  FE+
Subjt:  TPSPPPVVAVEEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G54500.1 Rubredoxin-like superfamily protein

9.8e-30

76.81

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Query:  EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE
        E E+ I+KRR+EEKFAVLNTGIYECRSCG+K+DE+ GDP+YPI PG  F++LPEDWRCPTCGAA+SFFE
Subjt:  EEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFE

Sequences

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CDS sequence

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ATGGTTAGATTCAACTTCAAACCCCCCGTCACCGTCGCCATTCCGACGTTGCAGAGATCATCGGCGGCCAGACCCATCTCCATTTTCACCGTCAACTCTATCGACGTCTC
TAAGGAAGACAAACCCACTTCTGATGACCCAAATACGCCGTCACCGCCGCCGGTTGTAGCGGTTGAAGAGGAGGAGAAGATTGATAAGCGACGGCTGGAGGAGAAATTTG
CAGTGTTGAATACAGGGATATATGAGTGCAGGTCATGTGGACATAAGTTCGATGAGGCGGTCGGGGATCCGACGTATCCAATAGCGCCGGGACTGCCGTTCGAGCAGCTG
CCGGAGGACTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAAAGGCTGTGCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTATTCCTCTCCGGCT
ATTTCTTGCAATGATAGATGAGATTGGATTGACCAATCAGGTGGATTGA

mRNA sequence

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Protein sequence

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MVRFNFKPPVTVAIPTLQRSSAARPISIFTVNSIDVSKEDKPTSDDPNTPSPPPVVAVEEEEKIDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPTYPIAPGLPFEQL
PEDWRCPTCGAAKSFFEKGCAYIWKLVVLLCSIPLRLFLAMIDEIGLTNQVD

PI0007687 (gene) of Melon (PI 482460) v1 genome