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PI0007797 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007797
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:10882538..10884808
RNA-Seq ExpressionPI0007797
SyntenyPI0007797
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-5671.43Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCIIAEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]7.5e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

XP_031739703.1 uncharacterized protein LOC116403241 [Cucumis sativus]8.8e-5769.93Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DN TFRPGYLAQL RMMA KL G N+  +  IDCRIKTLKR++QAIAEMCGPSCSGFGWND+ KCI+AEK+LFDNWV+SHPA  G LNK F YYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVPKGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F +DRATGA A+TFADVGSNVP G E FP  D ND+ IP M S   +MS ++I
Subjt:  FREDRATGARAKTFADVGSNVPKGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein3.6e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

A0A5A7V6Q9 Retrotransposon protein2.8e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

A0A5A7VES2 Retrotransposon protein2.8e-5671.43Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCIIAEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

A0A5D3CWL2 Retrotransposon protein3.6e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

A0A5D3DCZ1 Retrotransposon protein3.6e-5670.78Show/hide
Query:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        DNGTFRPGYLAQL RMMA KL G  ++ +  IDCRIKTLKRTFQAIAEM GP+CSGFGWNDE KCI+AEK+LFDNWV+SHPAAKG LNK FPYYDEL Y+
Subjt:  DNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

Query:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI
        F  DRATG  A+TFADVGSN P  GY+ F   DGN+ D P +YSQG+D+S +++
Subjt:  FREDRATGARAKTFADVGSNVP-KGYEGFPTDDGNDMDIPMMYSQGLDMSPNNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein1.2e-0628.38Show/hide
Query:  RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYMFREDRATG
        R K L+R +  I  +     +GF W+     +IA+ D+++ ++++HP A+ +  K  P Y  LC++F ++ + G
Subjt:  RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYMFREDRATG

AT4G02210.1 unknown protein6.2e-0828.24Show/hide
Query:  VKLLGSNIQGSLTIDC---RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        V L  +  + +  +D    R K+L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+ F+ +  PYY +LC +
Subjt:  VKLLGSNIQGSLTIDC---RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

AT4G02210.2 unknown protein6.2e-0828.24Show/hide
Query:  VKLLGSNIQGSLTIDC---RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM
        V L  +  + +  +D    R K+L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+ F+ +  PYY +LC +
Subjt:  VKLLGSNIQGSLTIDC---RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYM

AT5G27260.1 unknown protein8.9e-0734.15Show/hide
Query:  RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYMFREDRATGARAKTFAD
        R+K LK  +Q+  ++   S SGFGW+   K   A  +++ +++K+HP  K      F ++DEL  +F E  ATG  A    D
Subjt:  RIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYMFREDRATGARAKTFAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCACAAGAAATTGCTAGAATCCTAACCGTGTTCACAACCTCTCAACGTCAGTTACTAATGACGTTGGAGTTATTAATGAACGACCATAGAAGGATACAACATAC
ACCATTCGACATTAGGCATAGAATTAGGACGACCGCTGGATTATCGTCGATGAAAATTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTTCACATATTGGTGCACGATG
ACGACCGCTGGATTATCGTCGATGGAAATTGTCAATGTCAAAGAGATGGTCGCCATGTTCCTTCACATATTGGCGCACGATGTGAAGAATTGAGTGATTCAAAAGGAGTT
CGTGGGGTTCGTATGACAAGTTCGTTAGACAACGGGACCTTTAGACCTGGGTATTTGGCACAACTACAGAGAATGATGGCAGTGAAGCTACTAGGAAGTAACATCCAGGG
TTCTCTAACTATTGATTGTCGAATAAAGACCCTCAAGAGAACGTTCCAGGCCATAGCAGAAATGTGCGGCCCATCGTGCAGTGGGTTTGGTTGGAACGATGAAGTAAAGT
GCATCATCGCTGAGAAGGATCTATTCGACAATTGGGTGAAGAGCCATCCTGCCGCCAAGGGCTTCCTAAACAAACTGTTTCCCTATTACGATGAGTTGTGCTACATGTTT
AGGGAAGATCGTGCTACGGGAGCACGCGCGAAGACGTTCGCCGATGTGGGGTCGAATGTGCCTAAAGGGTACGAGGGATTTCCCACTGACGATGGAAACGATATGGATAT
CCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTAACAATATCATGGGCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCACAAGAAATTGCTAGAATCCTAACCGTGTTCACAACCTCTCAACGTCAGTTACTAATGACGTTGGAGTTATTAATGAACGACCATAGAAGGATACAACATAC
ACCATTCGACATTAGGCATAGAATTAGGACGACCGCTGGATTATCGTCGATGAAAATTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTTCACATATTGGTGCACGATG
ACGACCGCTGGATTATCGTCGATGGAAATTGTCAATGTCAAAGAGATGGTCGCCATGTTCCTTCACATATTGGCGCACGATGTGAAGAATTGAGTGATTCAAAAGGAGTT
CGTGGGGTTCGTATGACAAGTTCGTTAGACAACGGGACCTTTAGACCTGGGTATTTGGCACAACTACAGAGAATGATGGCAGTGAAGCTACTAGGAAGTAACATCCAGGG
TTCTCTAACTATTGATTGTCGAATAAAGACCCTCAAGAGAACGTTCCAGGCCATAGCAGAAATGTGCGGCCCATCGTGCAGTGGGTTTGGTTGGAACGATGAAGTAAAGT
GCATCATCGCTGAGAAGGATCTATTCGACAATTGGGTGAAGAGCCATCCTGCCGCCAAGGGCTTCCTAAACAAACTGTTTCCCTATTACGATGAGTTGTGCTACATGTTT
AGGGAAGATCGTGCTACGGGAGCACGCGCGAAGACGTTCGCCGATGTGGGGTCGAATGTGCCTAAAGGGTACGAGGGATTTCCCACTGACGATGGAAACGATATGGATAT
CCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTAACAATATCATGGGCACATGA
Protein sequenceShow/hide protein sequence
MDPQEIARILTVFTTSQRQLLMTLELLMNDHRRIQHTPFDIRHRIRTTAGLSSMKIFDVKEMVAMFLHILVHDDDRWIIVDGNCQCQRDGRHVPSHIGARCEELSDSKGV
RGVRMTSSLDNGTFRPGYLAQLQRMMAVKLLGSNIQGSLTIDCRIKTLKRTFQAIAEMCGPSCSGFGWNDEVKCIIAEKDLFDNWVKSHPAAKGFLNKLFPYYDELCYMF
REDRATGARAKTFADVGSNVPKGYEGFPTDDGNDMDIPMMYSQGLDMSPNNIMGT