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PI0007837 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007837
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr12:8133101..8133826
RNA-Seq ExpressionPI0007837
SyntenyPI0007837
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.0e-5372.96Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R   I I SP ESSTPPRPS NL+RPSGGV Q RPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTR
          +KRF+PRPEIK+YF+K + +YDPIIEPEYQSLTL+E  SKIFP+ FNFL EDL+K +
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.6e-5474.52Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R  GI I  P ESSTPPRPSANL+RP G V Q +PPASP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRK
         P+KRF+PRP+IK YF+K + +YDP IE EYQSLTL+E  SKIFPE FNFL EDLRK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.5e-6377.65Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RSFGI I SP ESSTPPRPS NL+RPS GV Q RPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKFYDFILVDTK
         P+KRF+PRPEIK+YF+K + +YDPIIE EYQSLT +ET SKIFPE FNFL EDLRKTRKFY+FIL DTK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKFYDFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]4.5e-4975.18Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAIYD
        MSADQYAMDLGFTTVTRS++RS  IRIES  ESSTPPRPSANL+RP GG  Q RPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YF+K + +YD
Subjt:  MSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAIYD

Query:  PIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKF
         IIEPEYQS+TL++T SKIF + FN L EDLRKTR F
Subjt:  PIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.7e-5173.86Show/hide
Query:  RVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAP
        R +STSS+G+R SSS N APSPMSADQYAMDLGFTTVTRS+ARS  I+I SP +SSTPPR SANL+RPS  V Q RP ASPLSN ESSTPPTTYSQ + P
Subjt:  RVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDL
        +KRF+PR EIK+YF+K V +YD IIEPEYQSLTL+ET SKIFP+ FNFL +DL
Subjt:  EKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein7.0e-6477.65Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RSFGI I SP ESSTPPRPS NL+RPS GV Q RPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKFYDFILVDTK
         P+KRF+PRPEIK+YF+K + +YDPIIE EYQSLT +ET SKIFPE FNFL EDLRKTRKFY+FIL DTK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKFYDFILVDTK

A0A5D3BM67 Uncharacterized protein2.2e-4975.18Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAIYD
        MSADQYAMDLGFTTVTRS++RS  IRIES  ESSTPPRPSANL+RP GG  Q RPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YF+K + +YD
Subjt:  MSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKTYFKKQVAIYD

Query:  PIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKF
         IIEPEYQS+TL++T SKIF + FN L EDLRKTR F
Subjt:  PIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKF

A0A5D3DHH1 Uncharacterized protein2.5e-4570.97Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESST-PPTTYSQA
        RGR +STSSKG+R SSS N  PS +SA QYA+DLGFT VTRS++R FGI I S  ESSTP RPSANL+RPSG V Q R  ASP SNMESST PPTTYSQA
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESST-PPTTYSQA

Query:  VAPEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDE-TFSKIFPEGFNFLSE
        V P+KRF+PRPE KTYFKK + +Y P IE EYQ+LTL+E T SKIFP+GFNFL E
Subjt:  VAPEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDE-TFSKIFPEGFNFLSE

A0A5D3E4J4 Uncharacterized protein7.8e-5574.52Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R  GI I  P ESSTPPRPSANL+RP G V Q +PPASP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRK
         P+KRF+PRP+IK YF+K + +YDP IE EYQSLTL+E  SKIFPE FNFL EDLRK
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRK

E5GCE6 Uncharacterized protein5.1e-5472.96Show/hide
Query:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R   I I SP ESSTPPRPS NL+RPSGGV Q RPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTR
          +KRF+PRPEIK+YF+K + +YDPIIEPEYQSLTL+E  SKIFP+ FNFL EDL+K +
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATAGTTCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
GATGGATTTAGGGTTTACTACGGTAACCCGATCTAAGGCAAGATCGTTCGGCATACGGATTGAATCTCCCAAGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAATCTTG
TCCGTCCTTCTGGCGGAGTAACTCAAACGAGGCCTCCTGCCTCTCCTTTATCAAATATGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAGAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACATTTTC
AAAAATCTTCCCAGAGGGCTTTAATTTTCTTTCAGAAGACCTCAGAAAAACCAGAAAATTTTACGACTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTAACGTAC
CTGACAAAAATGATCCTTCAAAGATCGCATATTCCAAACTAAAAATTTTCAAAGCAATCAATCCAACTCATTGGAATCAAGGGATTTTTACAGAAAAATCCTTTTCAAAC
CCGTTTGTACCTTTTACAGAAAAATCCTTTTCAAACCCGTTTGTACCTCAATCCTACTCTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATAGTTCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
GATGGATTTAGGGTTTACTACGGTAACCCGATCTAAGGCAAGATCGTTCGGCATACGGATTGAATCTCCCAAGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAATCTTG
TCCGTCCTTCTGGCGGAGTAACTCAAACGAGGCCTCCTGCCTCTCCTTTATCAAATATGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAGAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACATTTTC
AAAAATCTTCCCAGAGGGCTTTAATTTTCTTTCAGAAGACCTCAGAAAAACCAGAAAATTTTACGACTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTAACGTAC
CTGACAAAAATGATCCTTCAAAGATCGCATATTCCAAACTAAAAATTTTCAAAGCAATCAATCCAACTCATTGGAATCAAGGGATTTTTACAGAAAAATCCTTTTCAAAC
CCGTTTGTACCTTTTACAGAAAAATCCTTTTCAAACCCGTTTGTACCTCAATCCTACTCTTACTAG
Protein sequenceShow/hide protein sequence
MSIVRGRGRVSSTSSKGSRLSSSPNPAPSPMSADQYAMDLGFTTVTRSKARSFGIRIESPKESSTPPRPSANLVRPSGGVTQTRPPASPLSNMESSTPPTTYSQAVAPEK
RFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETFSKIFPEGFNFLSEDLRKTRKFYDFILVDTKSVEITNVPDKNDPSKIAYSKLKIFKAINPTHWNQGIFTEKSFSN
PFVPFTEKSFSNPFVPQSYSY