CuGenDBv2

Gene ID	PI0007863
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr06:12645678..12646175
RNA-Seq Expression	PI0007863
Synteny	PI0007863
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR005135 - Endonuclease/exonuclease/phosphatase IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

1.2e-64

72.67

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+WSSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

6.9e-65

73.29

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK RF F   V+DE+FV G ++DL  G+ VEV+CVYASNS+ +RR LWR L EITS+WSS  VVMGDFNAIRVHSEA GGSPI  +MEEFDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN++ L+AWP++R+ VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

3.3e-67

75.16

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+WSSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

1.2e-64

72.67

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+WSSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

3.3e-67

75.16

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+WSSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

1.6e-67

75.16

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+WSSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

A0A5A7SPE5 Reverse transcriptase domain-containing protein

5.7e-65

72.67

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+WSSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

A0A5A7TZS0 Reverse transcriptase domain-containing protein

3.3e-65

73.29

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK RF F   V+DE+FV G ++DL  G+ VEV+CVYASNS+ +RR LWR L EITS+WSS  VVMGDFNAIRVHSEA GGSPI  +MEEFDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN++ L+AWP++R+ VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

A0A5A7V275 Reverse transcriptase

1.6e-67

75.16

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+WSSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

A0A5D3DXE4 Reverse transcriptase domain-containing protein

5.7e-65

72.67

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+WSSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP
        LVEP+VQGNWFTWTSKV GSG LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Subjt:  LVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTCATTTCTGATTTGCATTCTGGTATGACTGTGGAGGTGTTATGTGT
TTATGCCTCTAATAGTAATTTGGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGTTGGTCGAGTCCAAGTGTGGTTATGGGAGATTTTAATGCAATTC
GAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGATTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGG
TTCACTTGGACCAGCAAGGTGGGAGGTTCAGGTCGGTTGCGTCGGCTTGATCATATTTTGGTAAATGAGCAGGGGTTAACGGCTTGGCCTAGTCTGCGTGTTACTGTTTT
GCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTGATGTTAAGCAGTAG

mRNA sequence

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Protein sequence

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MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNW
FTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYPDVKQ

PI0007863 (gene) of Melon (PI 482460) v1 genome