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PI0007886 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007886
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:15078150..15078782
RNA-Seq ExpressionPI0007886
SyntenyPI0007886
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-1553.66Show/hide
Query:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK
        GH  ++  I+R+A+EYGN+QL  IAEWP   R+D   TR  +V QL+ IP L+ +D+ R MRIL RNV DMKAFL++PD+ K
Subjt:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK

KAA0054687.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-1553.66Show/hide
Query:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK
        GH  ++  I+R+A+EYGN+QL  IAEWP   R+D   TR  +V QL+ IP L+ +D+ R MRIL RNV DMKAFL++PD+ K
Subjt:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK

KAA0056591.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-1651.76Show/hide
Query:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID
        G  N E +++IR AME  NDQL+AIA+W K   +DE TTR  V+ QLQ IP LSR+D+ARCM+ +   + +MKAFL + +D K+D
Subjt:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID

KAA0058838.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-1652.44Show/hide
Query:  NAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID
        N E + +IR A+E  NDQL+ IAEWPK   +DE  TR  V+ QL+ IP LS +D+ARC+R L +N+ DMKAFL +P++ K+D
Subjt:  NAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1558.02Show/hide
Query:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDD
        GG + E ++IIR+ MEY NDQLKAIAEWP    +D  TTR   V QLQGI  LSR+DKA C+ +L  NV DMKA L + DD
Subjt:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDD

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein9.7e-1653.66Show/hide
Query:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK
        GH  ++  I+R+A+EYGN+QL  IAEWP   R+D   TR  +V QL+ IP L+ +D+ R MRIL RNV DMKAFL++PD+ K
Subjt:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK

A0A5A7UJB1 Retrotransposon protein9.7e-1653.66Show/hide
Query:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK
        GH  ++  I+R+A+EYGN+QL  IAEWP   R+D   TR  +V QL+ IP L+ +D+ R MRIL RNV DMKAFL++PD+ K
Subjt:  GHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFK

A0A5A7USV9 Retrotransposon protein4.3e-1651.76Show/hide
Query:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID
        G  N E +++IR AME  NDQL+AIA+W K   +DE TTR  V+ QLQ IP LSR+D+ARCM+ +   + +MKAFL + +D K+D
Subjt:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID

A0A5A7UUF7 Retrotransposon protein4.3e-1652.44Show/hide
Query:  NAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID
        N E + +IR A+E  NDQL+ IAEWPK   +DE  TR  V+ QL+ IP LS +D+ARC+R L +N+ DMKAFL +P++ K+D
Subjt:  NAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID

A0A5D3CL79 Retrotransposon protein7.4e-1658.02Show/hide
Query:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDD
        GG + E ++IIR+ MEY NDQLKAIAEWP    +D  TTR   V QLQGI  LSR+DKA C+ +L  NV DMKA L + DD
Subjt:  GGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGCCATAATGCAGAAGCTCTGAAGATCATTCGCAGCGCCATGGAGTATGGGAATGACCAGCTGAAGGCTATTGCAGAATGGCCAAAGGAAGGACGGGAAGACGA
ATACACAACCCGTGCAGCAGTCGTTACGCAATTGCAGGGCATCCCTAGACTATCAAGAATCGACAAGGCGCGCTGTATGCGGATACTCACGCGAAACGTGGTCGATATGA
AAGCGTTTTTGCAAATACCTGACGACTTTAAGATCGACTAA
mRNA sequenceShow/hide mRNA sequence
GCGCTACCAGACAACGCGCAGAGACGTTCGCAGATGTCGGTTCCAATGTGCCCGATGGTTTCGGGGAGTTCGTTGGTGACGGTGTTTCAAATATGGACATCCCATGCATG
TACAGCCAGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCATGTCTGGAATGGTCGGGTGAGGGTAGGGCGAGTTCCAGCGGTTCGAAAAGGAAATGGGGGGCCAT
AATGCAGAAGCTCTGAAGATCATTCGCAGCGCCATGGAGTATGGGAATGACCAGCTGAAGGCTATTGCAGAATGGCCAAAGGAAGGACGGGAAGACGAATACACAACCCG
TGCAGCAGTCGTTACGCAATTGCAGGGCATCCCTAGACTATCAAGAATCGACAAGGCGCGCTGTATGCGGATACTCACGCGAAACGTGGTCGATATGAAAGCGTTTTTGC
AAATACCTGACGACTTTAAGATCGACTAATGCACAGTCATTCTCCAAGATAATGCTTGACCACGTACCTTCTGCTGCCAAACGTTTGTCCAATGTCTATGTCTTTCCTTA
CAAGTTCCATTCTGTTGTGCAAGTTAATTTCACCTTTTGTTGTACGAACTCTTTTATTATTACCAGTTAATTATGAATTGCAG
Protein sequenceShow/hide protein sequence
MGGHNAEALKIIRSAMEYGNDQLKAIAEWPKEGREDEYTTRAAVVTQLQGIPRLSRIDKARCMRILTRNVVDMKAFLQIPDDFKID