CuGenDBv2

Gene ID	PI0007922
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Genome location	chr08:22331781..22332745
RNA-Seq Expression	PI0007922
Synteny	PI0007922
Gene Ontology terms	GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]

7.1e-51

90.08

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS IL SSLPPAR L CNHQD RHCLFQIG SVRAN+SRAR  FR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_008442523.1 PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo]

1.7e-49

91.74

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS IL SSLPPAR L  N QDGRH LFQIGSSVRANNSRAR  FRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNKSILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]

5.3e-46

86.78

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ ILSSSL PAR  IC+ QDGR CLFQ+G SVRANN RARAPFRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]

2.6e-45

85.95

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ ILSSSL PA   IC+ QDGR CLFQ+G SVRANN RARAPFRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]

3.3e-48

90.08

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSSAILSSSL PAR  IC+ QDGR CLFQIG SVRANNSR+R PFRVQ AAKPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAI0 Uncharacterized protein

3.4e-51

90.08

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS IL SSLPPAR L CNHQD RHCLFQIG SVRAN+SRAR  FR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A1S3B5V9 high-light-induced protein, chloroplastic

8.5e-50

91.74

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS IL SSLPPAR L  N QDGRH LFQIGSSVRANNSRAR  FRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNKSILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein

8.5e-50

91.74

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASSS IL SSLPPAR L  N QDGRH LFQIGSSVRANNSRAR  FRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNKSILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic

2.5e-46

86.78

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ ILSSSL PAR  IC+ QDGR CLFQ+G SVRANN RARAPFRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic

2.5e-46

86.78

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Query:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ ILSSSL PAR  IC+ QDGR CLFQ+G SVRANN RARAPFRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELI
Subjt:  MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

SwissProt top hits

e value

%identity

Alignment

O81208 Light-harvesting complex-like protein OHP1, chloroplastic

1.3e-23

56.67

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Query:  SSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRAN--NSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELIL
        SS+ LSSSL      +  H  GR          R N   +R + PF V+ AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELIL
Subjt:  SSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRAN--NSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NK IL++IGV++GKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

Arabidopsis top hits

e value

%identity

Alignment

AT5G02120.1 one helix protein

9.3e-25

56.67

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Query:  SSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRAN--NSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELIL
        SS+ LSSSL      +  H  GR          R N   +R + PF V+ AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELIL
Subjt:  SSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRAN--NSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NK IL++IGV++GKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGTCCTCCTCTGCGATTTTATCATCTTCTCTTCCTCCGGCCAGACCTCTGATTTGCAACCATCAAGACGGTCGCCACTGTCTCTTTCAAATTGGGTCTTCTGTCCG
TGCCAATAACAGCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTG
GATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAGAGTATACTTCAGGTGATTGGA
GTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

mRNA sequence

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TTTGGACTAAAAAAAAAGGAAGCGTGGCGTCATCTCCAAATCCCCAAGATCTAGTAGGACCAACACTCCAGCCTAGCATTTAATTTTTAAGGTGGAAAAAGTAGTTCCGG
AAAGAAAATTTGAAGAGGGAAAGTTCTGATAACGTTACCGAAGCAGTGGTTGTGGTTGTGGTTGTGTTTGGAGCATTTCCAAATAATGGCGTCCTCCTCTGCGATTTTAT
CATCTTCTCTTCCTCCGGCCAGACCTCTGATTTGCAACCATCAAGACGGTCGCCACTGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTGCC
CCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTG
GAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAGAGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATC
TTCCTCTTTGATTCCCAGAAAAGTTTTAAACATCTTGAGATCCTTTGTGTCTTTTTATTGAAAAAAGAAAAACAATGAAATTGTAACTGTACCACAGGACTTTCAACTGT
ATCAGAGAATTCTACAATCTTCAAGTTCTTGTACTTCATAAGTAATTTACATAACATTGTCACCGTTG

Protein sequence

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MASSSAILSSSLPPARPLICNHQDGRHCLFQIGSSVRANNSRARAPFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKSILQVIG
VDVGKGLDLPL

PI0007922 (gene) of Melon (PI 482460) v1 genome