| GenBank top hits | e value | %identity | Alignment |
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| KAG6593063.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. sororia] | 9.0e-62 | 80 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVL+EEEITRLFRVRKTVLQML+DRGY VGDFE MSREQFKN+YGE+MK+ED+VINK+ RN+S +QIY+FFPEEPKV VKT++TY NRMKS+NVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ L+ FAR+CI E + KFHLEVFQEAELLVNIKDHVL+PEHQLL+NEEKKTL
Subjt: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| XP_004145446.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] | 1.5e-72 | 92.86 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEIT+LFR RKTVLQMLRDRG++VGDFE AMSREQFKNQYGETMKKEDLVINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNE+KKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| XP_008459046.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] | 6.6e-73 | 93.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEITRLFRVRKTVLQMLRDRG++VGDFE AMSREQFKNQ+GETMKKED+VINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| XP_016902349.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo] | 6.6e-73 | 93.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEITRLFRVRKTVLQMLRDRG++VGDFE AMSREQFKNQ+GETMKKED+VINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| XP_022959553.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 9.0e-62 | 80 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVL+EEEITRLFRVRKTVLQML+DRGY VGDFE MSREQFKN+YGE+MK+ED+VINK+ RN+S +QIY+FFPEEPKV VKT++TY NRMKS+NVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ L+ FAR+CI E + KFHLEVFQEAELLVNIKDHVL+PEHQLL+NEEKKTL
Subjt: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LYM6 Uncharacterized protein | 7.1e-73 | 92.86 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEIT+LFR RKTVLQMLRDRG++VGDFE AMSREQFKNQYGETMKKEDLVINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNE+KKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| A0A1S3C8T2 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 | 3.2e-73 | 93.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEITRLFRVRKTVLQMLRDRG++VGDFE AMSREQFKNQ+GETMKKED+VINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| A0A1S4E290 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 | 3.2e-73 | 93.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEITRLFRVRKTVLQMLRDRG++VGDFE AMSREQFKNQ+GETMKKED+VINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| A0A5A7TIR4 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 | 3.2e-73 | 93.51 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVLSEEEITRLFRVRKTVLQMLRDRG++VGDFE AMSREQFKNQ+GETMKKED+VINKSMRNNS +QIYVFFPEEPKVSVKTVRTY+NRMKSDNVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ+KLSSFARS ICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Subjt: VVQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like | 4.3e-62 | 80 | Show/hide |
Query: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
MVL+EEEITRLFRVRKTVLQML+DRGY VGDFE MSREQFKN+YGE+MK+ED+VINK+ RN+S +QIY+FFPEEPKV VKT++TY NRMKS+NVFRAIL
Subjt: MVLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAIL
Query: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VVQ L+ FAR+CI E + KFHLEVFQEAELLVNIKDHVL+PEHQLL+NEEKKTL
Subjt: VVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 4.7e-29 | 41.45 | Show/hide |
Query: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
EEE RL+++RKT++Q+ DRGY+V E + E+FK Q+G+ ++ DL + + ++ +Q++VFFPEEPKV +KT++ Y RM+ +N+ RA+
Subjt: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
Query: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
+VVQ ++ A+ + + APK+ LE F + ELL+NI +H L+PEH ++T EE
Subjt: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 1.9e-51 | 62.99 | Show/hide |
Query: VLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAILV
+L+EEE+ RL+R++KT++QMLRDRGY + D E M+++QF ++G+ MK+EDLV K+ RN++ +Q+Y+FFP+E KV VKT++ Y NRMKS+NVFRAILV
Subjt: VLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAILV
Query: VQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VQ L+ FAR+CI E + KFHLEVFQEAE+LVNIK+HVL+PEHQ+LT EEKKTL
Subjt: VQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.8e-28 | 41.45 | Show/hide |
Query: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
EEE RL+++RKT++Q+ DRGY+V E + E+FK Q G+ ++ DL + + ++ +Q++VFFPEEPKV +KT++ Y RM+ +N+ RA+
Subjt: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
Query: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
+VVQ ++ A+ + + APK+ LE F + ELL+NI +H L+PEH ++T EE
Subjt: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
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| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.0e-28 | 40.79 | Show/hide |
Query: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
EEE RL+++RKT++Q+ DRGY+V E + E+F+ Q+G+ ++ DL + + ++ +Q++VFFPEEPKV +KT++ Y RM+ +N+ RA+
Subjt: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
Query: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
+VVQ ++ A+ + + APK+ LE F + ELL+NI +H L+PEH ++T EE
Subjt: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 4.7e-29 | 41.45 | Show/hide |
Query: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
EEE RL+++RKT++Q+ DRGY+V E + E+FK Q+G+ ++ DL + + ++ +Q++VFFPEEPKV +KT++ Y RM+ +N+ RA+
Subjt: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGE-----TMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAI
Query: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
+VVQ ++ A+ + + APK+ LE F + ELL+NI +H L+PEH ++T EE
Subjt: LVVQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEE
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 1.6e-16 | 34.87 | Show/hide |
Query: SEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTY-VNRMKSDNVFRAILVV
S E + + R+T ++MLRDRGY V D + +S +QF+ YGE + L I+ R +S +I V F V V +R + + +N+ ILV+
Subjt: SEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTY-VNRMKSDNVFRAILVV
Query: QDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
Q +++ A + E F +E+F+ +LLVN+ HVL P+HQ+L ++EK++L
Subjt: QDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.4e-52 | 62.99 | Show/hide |
Query: VLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAILV
+L+EEE+ RL+R++KT++QMLRDRGY + D E M+++QF ++G+ MK+EDLV K+ RN++ +Q+Y+FFP+E KV VKT++ Y NRMKS+NVFRAILV
Subjt: VLSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVNRMKSDNVFRAILV
Query: VQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VQ L+ FAR+CI E + KFHLEVFQEAE+LVNIK+HVL+PEHQ+LT EEKKTL
Subjt: VQDKLSSFARSCICE-APKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 2.7e-16 | 33.77 | Show/hide |
Query: EITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRT-YVNRMKSDNVFRAILVVQDK
E R + R T +MLRDRGY V + E +++ +F++ +GE + E L I +R++ +I V F ++VK+VR ++ + + ILV+Q K
Subjt: EITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRT-YVNRMKSDNVFRAILVVQDK
Query: LSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTLWR
++ FA+ + P F +E F +LLVNI H+ P+ ++L EEK+ L R
Subjt: LSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTLWR
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.3e-18 | 37.91 | Show/hide |
Query: LSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYV-NRMKSDNVFRAILV
LS EE R + R+ LQMLRDRGY V D + +S F+ YGE + L I+ R++S ++ + F V V +R+ V + + + + ILV
Subjt: LSEEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETMKKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYV-NRMKSDNVFRAILV
Query: VQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
+Q+ +++ A I E F +E+FQ +LLVNI H L P+HQ+L +EEK TL
Subjt: VQDKLSSFARSCICEAPKFHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 8.5e-26 | 41.29 | Show/hide |
Query: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETM---KKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVN-RMKSDNVFRAIL
++EITR+F+VR+TVLQMLRDRGY + + + + RE+F ++ +TM KE L ++ + N ++IYVF+PE PKV V ++ V +M+ D V R I+
Subjt: EEEITRLFRVRKTVLQMLRDRGYIVGDFEFAMSREQFKNQYGETM---KKEDLVINKSMRNNSPNQIYVFFPEEPKVSVKTVRTYVN-RMKSDNVFRAIL
Query: VVQDKLSSFARSCICEAPK-FHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
VV +++ AR + E K +EVF+EAEL+ NI +H L+ ++ +L ++ KK L
Subjt: VVQDKLSSFARSCICEAPK-FHLEVFQEAELLVNIKDHVLIPEHQLLTNEEKKTL
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