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PI0007937 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0007937
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:24289590..24289835
RNA-Seq ExpressionPI0007937
SyntenyPI0007937
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]4.3e-1263.64Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSA
        MSP+ IMGT+   S EGKT  +  KRKRGGQ++E AEIIRNA +YAN+QLK IAEW NV+ Q+ SA
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSA

KAA0055448.1 uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa]1.1e-1062.9Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQ
        MS + IMGT+  RS +GK   S SKRKRGG + ET  IIRN M++AN+QLKAI EW NVQRQ
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQ

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-1265.08Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQD
        M PD IMGTR  RS E +TG S SKRK+GGQ +E+ EIIR+AM+Y N QLKAIAEWSN+   D
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQD

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-1467.65Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAIL
        M  D IMGTR DRS EG+TG S SKRK+GGQ++ET EIIRN M+++N++LKAI EW NVQRQD SA L
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAIL

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]8.2e-1163.08Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGS
        MS   I GTR   + E + G S SK+K+GGQS+ET EIIRN M+YAN+QLKAIAEW NVQ QD S
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGS

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL662.1e-1263.64Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSA
        MSP+ IMGT+   S EGKT  +  KRKRGGQ++E AEIIRNA +YAN+QLK IAEW NV+ Q+ SA
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSA

A0A5A7UK94 Uncharacterized protein5.2e-1162.9Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQ
        MS + IMGT+  RS +GK   S SKRKRGG + ET  IIRN M++AN+QLKAI EW NVQRQ
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQ

A0A5A7V3C0 Retrotransposon protein4.7e-1265.08Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQD
        M PD IMGTR  RS E +TG S SKRK+GGQ +E+ EIIR+AM+Y N QLKAIAEWSN+   D
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQD

A0A5A7V469 Retrotransposon protein1.0e-1467.65Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAIL
        M  D IMGTR DRS EG+TG S SKRK+GGQ++ET EIIRN M+++N++LKAI EW NVQRQD SA L
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAIL

A0A5D3CL79 Retrotransposon protein4.0e-1163.08Show/hide
Query:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGS
        MS   I GTR   + E + G S SK+K+GGQS+ET EIIRN M+YAN+QLKAIAEW NVQ QD S
Subjt:  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCTGACGGCATCATGGGCACACGACTTGATCGCTCAGATGAGGGTAAGACTGGTCCAAGCATGTCAAAGAGGAAGCGAGGAGGCCAATCCTTAGAAACGGCAGA
AATCATTCGCAATGCAATGAAATATGCGAATAACCAGCTGAAGGCCATTGCAGAATGGTCGAATGTACAACGCCAAGATGGAAGCGCAATATTGCGGAGGTCGTTAGACA
GTTGTAGGGAATCCCTGAATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCTGACGGCATCATGGGCACACGACTTGATCGCTCAGATGAGGGTAAGACTGGTCCAAGCATGTCAAAGAGGAAGCGAGGAGGCCAATCCTTAGAAACGGCAGA
AATCATTCGCAATGCAATGAAATATGCGAATAACCAGCTGAAGGCCATTGCAGAATGGTCGAATGTACAACGCCAAGATGGAAGCGCAATATTGCGGAGGTCGTTAGACA
GTTGTAGGGAATCCCTGAATGAGTAG
Protein sequenceShow/hide protein sequence
MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAILRRSLDSCRESLNE