CuGenDBv2

Gene ID	PI0007970
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr10:7595723..7596004
RNA-Seq Expression	PI0007970
Synteny	PI0007970
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032476.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-40

92.39

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

KAA0038841.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-40

92.39

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

KAA0060777.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-41

89.25

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVVI
        MKKWAD + RPLEFRAGDQVLIKLRPEQ+RFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKIHPV+HVSNLKPCHQD DDMQRNV++
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVVI

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-40

92.39

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-40

92.39

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UXR6 Reverse transcriptase

5.5e-41

92.39

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

A0A5A7V1R7 Reverse transcriptase

1.1e-41

89.25

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVVI
        MKKWAD + RPLEFRAGDQVLIKLRPEQ+RFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKIHPV+HVSNLKPCHQD DDMQRNV++
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVVI

A0A5D3BRZ6 Reverse transcriptase

5.5e-41

92.39

Show/hide

Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

A0A5D3C4R1 Reverse transcriptase

5.5e-41

92.39

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

A0A5D3DBE0 Reverse transcriptase

5.5e-41

92.39

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLV+KYEGPVEVLKKVGNTSYRVAL TWMKI+PVIHVSNLKP HQD +D+QRNVV
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGTGGGCAGATAAGAAACGTCGTCCCCTCGAGTTTCGGGCGGGAGATCAAGTCCTCATCAAGTTACGACCAGAACAAGTCCGATTCCGAGGACGCAAAGACCA
ACGCCTCGTTAAGAAATATGAGGGACCTGTAGAAGTCCTCAAAAAGGTGGGAAACACATCCTACCGAGTGGCGTTGTCCACGTGGATGAAAATACATCCAGTAATTCACG
TGAGTAACTTAAAGCCTTGCCATCAAGACCTTGACGACATGCAACGCAACGTTGTCATTTGA

mRNA sequence

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Protein sequence

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MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVKKYEGPVEVLKKVGNTSYRVALSTWMKIHPVIHVSNLKPCHQDLDDMQRNVVI

PI0007970 (gene) of Melon (PI 482460) v1 genome