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PI0008003 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008003
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSigma factor binding protein 2
Genome locationchr04:7544533..7546214
RNA-Seq ExpressionPI0008003
SyntenyPI0008003
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]3.4e-2992.59Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEEDEQELLLDSSCDDDFLRSSYESLEDI
        MRVHTSASEFRALVQELTGRDAEFPDPTKFYPA SCEIMN  D+EKKVV AEGEEDEQELL+DSSCDDDFLRSSYESLEDI
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEEDEQELLLDSSCDDDFLRSSYESLEDI

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]4.0e-4686.89Show/hide
Query:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE
        MD++L+VSELT  TT KKKKTTRKRKSCEE K+PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA +GE+DEQE
Subjt:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE

Query:  LLLDSSCDDDFLRSSYESLEDI
        LL+DSSCDDDF RSS+ESLEDI
Subjt:  LLLDSSCDDDFLRSSYESLEDI

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]8.9e-4688.8Show/hide
Query:  MDQSLVVSELTMMTTMKKK-KTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEED
        MD+SL+VSELT  TTMKK  KTTRKRKSCEE K+PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA SCEIMN  D+EKKVV AEGEED
Subjt:  MDQSLVVSELTMMTTMKKK-KTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEED

Query:  EQELLLDSSCDDDFLRSSYESLEDI
        EQELL+DSSCDDDFLRSSYESLEDI
Subjt:  EQELLLDSSCDDDFLRSSYESLEDI

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.1e-2358.4Show/hide
Query:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN-DLEKKVVAEGEEDEQEL
        MD++L+VSE+  M     KK TRKRK   +K +PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN-DLEKKVVAEGEEDEQEL

Query:  L----LDSSCDDDFLRSSYESLEDI
        L         +DDFL S YES E++
Subjt:  L----LDSSCDDDFLRSSYESLEDI

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]2.4e-1452.68Show/hide
Query:  KKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP-ASCEIMNDLEKKVVAEGEEDEQELLL--------DSSCDDD
        +K+  RKRK C+ K +PLKVVYISNPMRV  SA+EFR LVQ+LTG+DA      KF P AS E      +K+  + ++D+Q+LLL        DSS  DD
Subjt:  KKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYP-ASCEIMNDLEKKVVAEGEEDEQELLL--------DSSCDDD

Query:  FLRSSYESLEDI
        FL  SYESLE I
Subjt:  FLRSSYESLEDI

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein4.3e-4688.8Show/hide
Query:  MDQSLVVSELTMMTTMKKK-KTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEED
        MD+SL+VSELT  TTMKK  KTTRKRKSCEE K+PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA SCEIMN  D+EKKVV AEGEED
Subjt:  MDQSLVVSELTMMTTMKKK-KTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPA-SCEIMN--DLEKKVV-AEGEED

Query:  EQELLLDSSCDDDFLRSSYESLEDI
        EQELL+DSSCDDDFLRSSYESLEDI
Subjt:  EQELLLDSSCDDDFLRSSYESLEDI

A0A1S3B8H6 uncharacterized protein LOC1034871671.9e-4686.89Show/hide
Query:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE
        MD++L+VSELT  TT KKKKTTRKRKSCEE K+PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA +GE+DEQE
Subjt:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE

Query:  LLLDSSCDDDFLRSSYESLEDI
        LL+DSSCDDDF RSS+ESLEDI
Subjt:  LLLDSSCDDDFLRSSYESLEDI

A0A5D3DPQ4 Sigma factor binding protein 21.9e-4686.89Show/hide
Query:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE
        MD++L+VSELT  TT KKKKTTRKRKSCEE K+PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPASCEI MNDLEKKVVA +GE+DEQE
Subjt:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEI-MNDLEKKVVA-EGEEDEQE

Query:  LLLDSSCDDDFLRSSYESLEDI
        LL+DSSCDDDF RSS+ESLEDI
Subjt:  LLLDSSCDDDFLRSSYESLEDI

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.0e-2358.4Show/hide
Query:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN-DLEKKVVAEGEEDEQEL
        MD++L+VSE+  M     KK TRKRK   +K +PLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN-DLEKKVVAEGEEDEQEL

Query:  L----LDSSCDDDFLRSSYESLEDI
        L         +DDFL S YES E++
Subjt:  L----LDSSCDDDFLRSSYESLEDI

A0A803QPK6 Uncharacterized protein2.2e-1354.08Show/hide
Query:  TTMKKKKTT----RKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMNDLEKKVVAEGEED-EQELLLDSSCD
        T  + KK+T    + +KS  ++K P+KVVYISNPM+V TSASEFRALVQELTG+DAEFPDPTKF  A  E     E      G ED + +L+++SS D
Subjt:  TTMKKKKTT----RKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMNDLEKKVVAEGEED-EQELLLDSSCD

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.4e-0648.72Show/hide
Query:  MDQS---LVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MDQS   L++++    ++  +    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDQS---LVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.5e-0849.37Show/hide
Query:  LTMMTTMKKKKTTRKRKSCEEKK------RPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN
        LT  +  KKK +   RKS ++KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  LTMMTTMKKKKTTRKRKSCEEKK------RPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.0e-0748.72Show/hide
Query:  MDQS---LVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF
        MDQS   L++++    ++  +    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    P PT F
Subjt:  MDQS---LVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEF--PDPTKF

AT3G56710.1 sigma factor binding protein 11.1e-0949.37Show/hide
Query:  LTMMTTMKKKKTTRKRKSCEEKK------RPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN
        LT  +  KKK +   RKS ++KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  LTMMTTMKKKKTTRKRKSCEEKK------RPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAAGTTTAGTGGTAAGTGAGCTAACAATGATGACGACGATGAAGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAAGAAGCGACCTCTAAAAGT
TGTATACATATCCAACCCCATGAGGGTTCACACAAGTGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGACGAGATGCCGAGTTTCCCGACCCGACTAAGTTCT
ATCCAGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGAATTGTTACTTGATTCAAGCTGTGATGATGATTTTTTA
AGGAGTTCATATGAAAGCTTGGAGGATATTTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAATTTATGAACCCATTTTAGTCTAATTTAAAGTCACTTCCAATCCTAAATATAGAAAAACGGGTCAAATTATTTAAAAGTTATAACAAAATAGTTTTACATTTTTT
ACAATTGAAATAGAGATTGATTTATCAGTGTAAAAACAAATAGAAGTCAGTATTCGATTAAAAACCATTTTTATAATTTAACCTTAAGATGTTTTTCTTAAAAAAAGGAA
AATTGATTAAACTTCTCGTGAAGAAAGAAAGGTGCATGGTATATTACTACATAGCGTAGTACTAGATTGTCACCCACACACCTCATTCACAAGTTTTTTTGATTCCAACA
TCCGCATCCGTGGCTGCTTTCCACTATGACGTCATCACTAAAAGTCGACATGACGTCACGATAGAGACGACTTGTCGTTATCCTCGCCGCGGTCCAGTGCATTATTGGTG
TAAAAAATCGCACCATCCTCCACGCTATCTCGTACAGCGTTGAATACACGCCCAAAGTAAAAGGAGAAACCTAATTAATCCCCAGTGCGCCACGCGCTTCTTCAGCGCGT
GATTTTGACAAGTTTTGTTTTTTTCCTTGTGGTTCTTCAACGCCATTGGCTTACCAAATTTGCCAATTTGCTGTGATTTGTCTCATGACATTGGCTGTCTTCATATCTCT
ATTTTCCCTATTCCTCTTTTTTCTTTTCTTTTCTTTTCTTTTTAATTATATAATCTTTAGTTTAATATTTGTTAAATGTTTCATTTCATCTTGTATTATACTATACATTA
CAAATATATGTTTGAAGCAGATCTTCCATAATAATCTCTAATAAAAAAACCAGAGTTAATTAGTATATCAGTCACATAATTTAGAATATTTTATTTTTATTTTAAGCATA
AAAGATAAGATTGTAACTTTTGAAAGAATAAGGGTATTTTTAAACAAAATACAAAGCTAACGATATTTCATTTTAGTCTAACTTTTTTTCCTCCTTCACTTTCCAAGAAA
CCTCCTACTTACAATTTTGCAGCCACCAAACACTTTTCTCTCCCCCATAAATTAACCCTCCAAAACTGCCTCTTCACGAACCCGAACTCGAAAAGGAGACGAAAAAAATG
GATCAAAGTTTAGTGGTAAGTGAGCTAACAATGATGACGACGATGAAGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGAAGAAAAGAAGCGACCTCTAAAAGTTGT
ATACATATCCAACCCCATGAGGGTTCACACAAGTGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGACGAGATGCCGAGTTTCCCGACCCGACTAAGTTCTATC
CAGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGAATTGTTACTTGATTCAAGCTGTGATGATGATTTTTTAAGG
AGTTCATATGAAAGCTTGGAGGATATTTGAGGAGAGATGTGATGGAGAGCTTTGGAGCCATCTCTACATCTTTTTTCAATCCTTTGGTTTAGTATAATAATTGAGGTTTT
TCATCTTTATTCTCAGCTTTCATCTAATTTAGCTATCTTTTCAAGCCTGTCCAAAATAAATGAAATGCACAATATTGTAATGTGTATGTTTAATTTGCTCACTCTATGAT
AATCCATCTAACTTTATAAATTTTTGGTTTAA
Protein sequenceShow/hide protein sequence
MDQSLVVSELTMMTTMKKKKTTRKRKSCEEKKRPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPTKFYPASCEIMNDLEKKVVAEGEEDEQELLLDSSCDDDFL
RSSYESLEDI