CuGenDBv2

Gene ID	PI0008013
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:15141630..15141833
RNA-Seq Expression	PI0008013
Synteny	PI0008013
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]

5.9e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD I+YIE SNEWS+WRDQLA TMF+DWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0063753.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

2.2e-22

79.1

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDE DST+ATTGGD I+YIE SNEWS+WRDQLA TMF+DWEL +Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

2.2e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLI REMTNN++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]

2.2e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLI REMTNN++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4J8 uncharacterized protein LOC103485952

1.1e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLI REMTNN++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5A7U0J9 Putative nuclease HARBI1

1.1e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLI REMTNN++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5A7V6M3 Putative nuclease HARBI1

1.1e-22

79.1

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDE DST+ATTGGD I+YIE SNEWS+WRDQLA TMF+DWEL +Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5D3CDG6 Putative nuclease HARBI1

1.1e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLI REMTNN++ DDLDEGDST+ATTGGD I+YIE SNEWS+ RDQLA TMF+DWELR+Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5D3DG22 Retrotransposon protein

2.9e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD I+YIE SNEWS+WRDQLA TMF+DWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGGGAGGTGACAA
TATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTTACTGATTGGGAGTTACGTAACCAGTAG

mRNA sequence

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Protein sequence

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MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDNISYIETSNEWSQWRDQLAETMFTDWELRNQ

PI0008013 (gene) of Melon (PI 482460) v1 genome