CuGenDBv2

Gene ID	PI0008024
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	RNase H domain-containing protein
Genome location	chr03:11311052..11311642
RNA-Seq Expression	PI0008024
Synteny	PI0008024
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

1.2e-63

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

KAA0048626.1 uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa]

2.0e-63

74.4

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKK
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

1.0e-62

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +N T  + EILKE+FT PLTK++KGEAK+I+K+ +EA+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEPIRITGKGK KV  TCHITVEES DS EGKK
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

1.2e-63

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

1.2e-63

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

5.7e-64

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

A0A5A7U320 Uncharacterized protein

9.8e-64

74.4

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKK
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK

A0A5A7V4F2 Reverse transcriptase domain-containing protein

4.8e-63

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +N T  + EILKE+FT PLTK++KGEAK+I+K+ +EA+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEPIRITGKGK KV  TCHITVEES DS EGKK
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKK

A0A5D3BIH8 Uncharacterized protein

5.7e-64

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

A0A5D3D1E5 Ribonuclease H

5.7e-64

68.42

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Query:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR
        Q++ S P VLRYIPLSRRKKGESPF E  +NLT  + EILKE+FT PLTK++KGEAK+I+K+ ++A+L E+R  EGFDPKAYKLMAKAGYDFTTRTELK 
Subjt:  QEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKR

Query:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY
        VKIFDER  LSP QKKL+KQGY IPNSR+G+GY+SSEP+RITGKGK KV  TCHITVEES DS EGKKV      V + + F A+ P ++
Subjt:  VKIFDERHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKV-----EVKEVLFFIALLPLLY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAATCCCACAAGAAAAAGCCTCAATACCTTCCGTTTTACGCTACATTCCATTGTCTCGACGAAAGAAGGGAGAATCACCATTTGTAGAAGGTTGGCAAAACTTAAC
GTTTGGAAGCGTTGAAATATTGAAGGAAAGCTTCACCACACCACTTACTAAGATGGATAAAGGAGAGGCGAAAAGAATTAAGAAAGAGGGCGTAGAAGCATTCCTTCTAG
AAAAGCGAATGGCAGAGGGGTTTGACCCAAAGGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTACGACTCGTACTGAGCTTAAAAGAGTGAAGATATTCGATGAA
AGGCATGGACTTTCCCCTATACAAAAGAAGCTTAAAAAACAAGGATATTTTATACCTAATTCAAGATCTGGAGTTGGATATAAGTCTTCTGAACCGATTCGAATAACTGG
TAAAGGAAAAGTAAAAGTTGTTATCACATGCCACATTACTGTTGAAGAAAGCAACGATTCTGGAGAAGGCAAAAAAGTAGAAGTCAAAGAAGTTCTGTTTTTTATCGCAT
TACTTCCTTTACTGTATACCCTTCAATATTCCAGAGGTTGA

mRNA sequence

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Protein sequence

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MTIPQEKASIPSVLRYIPLSRRKKGESPFVEGWQNLTFGSVEILKESFTTPLTKMDKGEAKRIKKEGVEAFLLEKRMAEGFDPKAYKLMAKAGYDFTTRTELKRVKIFDE
RHGLSPIQKKLKKQGYFIPNSRSGVGYKSSEPIRITGKGKVKVVITCHITVEESNDSGEGKKVEVKEVLFFIALLPLLYTLQYSRG

PI0008024 (gene) of Melon (PI 482460) v1 genome