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PI0008085 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008085
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationchr06:17493833..17499084
RNA-Seq ExpressionPI0008085
SyntenyPI0008085
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]2.0e-63100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_012065876.1 transcription elongation factor SPT4 homolog 2 [Jatropha curcas]2.5e-6195.69Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCE+ERVQY PPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]5.9e-6399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]1.0e-6298.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]5.9e-6399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog9.9e-64100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A1S3CFH1 Transcription elongation factor SPT4 homolog9.9e-64100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1CNB4 Transcription elongation factor SPT4 homolog2.9e-6399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1G8V8 Transcription elongation factor SPT4 homolog4.9e-6398.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1K6X8 Transcription elongation factor SPT4 homolog4.9e-6398.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A3.2e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q5RFH5 Transcription elongation factor SPT42.4e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q6DGQ0 Transcription elongation factor SPT48.4e-2048.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 11.9e-5681.03Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

Q94C60 Transcription elongation factor SPT4 homolog 24.6e-5885.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein1.4e-5781.03Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G08565.2 Transcription initiation Spt4-like protein4.1e-4668.97Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.1 SPT4 homolog 23.2e-5985.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.2 SPT4 homolog 26.8e-4191.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTACAATAT
GCACCACCAAAACGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTACAATAT
GCACCACCAAAACGTGTTTAA
Protein sequenceShow/hide protein sequence
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY
APPKRV