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PI0008148 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008148
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:17623332..17623828
RNA-Seq ExpressionPI0008148
SyntenyPI0008148
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]4.0e-2151.67Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQ-GGRSRG--DEG
        F+ +DRENL+DAWS  KR+VKAC H+GI +C+LME             VD VFVGG+L++SYNQ K  LD M SN++E  +D   ++Q  G +RG  DEG
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQ-GGRSRG--DEG

Query:  MDKNVVVALQGQMIAMNNLL
        MD+N +V LQGQ+  MN LL
Subjt:  MDKNVVVALQGQMIAMNNLL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]5.4e-2651.54Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNR------QGGRS
        M+F+Q+DRENL D W RFKRM+K CPH+ IPEC+LME              + VF GGML+SSYNQIK  LD M SN++EW ++ FG+R      +G R 
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNR------QGGRS

Query:  RGDEGMDKNVVVALQGQMIAMNNLLKSMAI
        R ++G+D +++VALQGQ+I M N+L+SMA+
Subjt:  RGDEGMDKNVVVALQGQMIAMNNLLKSMAI

KAA0059690.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-1751.58Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSR
        M F+Q++ ENLHDAWSRFKR++K C   GIPE +LME+            V AVF GGMLKS YNQIK+ L+ M  N++EWD+ DF +R  G  +
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSR

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]1.0e-1353.85Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEE
        F+Q+DR+NLHDAWS FKRMVKAC H+GI + +LME              D++F+GG+L+SSYNQIKA LD M +N+++
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEE

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]4.2e-3954.22Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GIPEC+ ME+            V+ +FVGGML+SSYNQIKATLD M++N++EWD+  FG+R  GR++  EG+
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSRGDEGM

Query:  DKNVVVALQGQMIAMNNLLKSMAISLMT--------------WDVWDAAVLITLTHAHSTLKLSRS
        DK+VVV LQGQMIAMNNLL+SM +S +               + VWD A+L +L HAHS +KLSR+
Subjt:  DKNVVVALQGQMIAMNNLLKSMAISLMT--------------WDVWDAAVLITLTHAHSTLKLSRS

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.0e-3954.22Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GIPEC+ ME+            V+ +FVGGML+SSYNQIKATLD M++N++EWD+  FG+R  GR++  EG+
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSRGDEGM

Query:  DKNVVVALQGQMIAMNNLLKSMAISLMT--------------WDVWDAAVLITLTHAHSTLKLSRS
        DK+VVV LQGQMIAMNNLL+SM +S +               + VWD A+L +L HAHS +KLSR+
Subjt:  DKNVVVALQGQMIAMNNLLKSMAISLMT--------------WDVWDAAVLITLTHAHSTLKLSRS

A0A5A7TUE1 Uncharacterized protein1.9e-2151.67Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQ-GGRSRG--DEG
        F+ +DRENL+DAWS  KR+VKAC H+GI +C+LME             VD VFVGG+L++SYNQ K  LD M SN++E  +D   ++Q  G +RG  DEG
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQ-GGRSRG--DEG

Query:  MDKNVVVALQGQMIAMNNLL
        MD+N +V LQGQ+  MN LL
Subjt:  MDKNVVVALQGQMIAMNNLL

A0A5A7V1F3 Retrotrans_gag domain-containing protein5.1e-1453.85Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEE
        F+Q+DR+NLHDAWS FKRMVKAC H+GI + +LME              D++F+GG+L+SSYNQIKA LD M +N+++
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEE

A0A5D3CC26 Uncharacterized protein2.6e-2651.54Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNR------QGGRS
        M+F+Q+DRENL D W RFKRM+K CPH+ IPEC+LME              + VF GGML+SSYNQIK  LD M SN++EW ++ FG+R      +G R 
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------IVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNR------QGGRS

Query:  RGDEGMDKNVVVALQGQMIAMNNLLKSMAI
        R ++G+D +++VALQGQ+I M N+L+SMA+
Subjt:  RGDEGMDKNVVVALQGQMIAMNNLLKSMAI

A0A5D3DR17 Retrotransposon gag protein3.8e-1751.58Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSR
        M F+Q++ ENLHDAWSRFKR++K C   GIPE +LME+            V AVF GGMLKS YNQIK+ L+ M  N++EWD+ DF +R  G  +
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEI------------VDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTCCAGCAGAAGGACAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCCTGAATGCATATTGATGGA
GATTGTTGATGCTGTGTTTGTAGGCGGTATGCTAAAGAGCTCTTACAACCAGATTAAGGCGACGCTGGACATAATGACCAGCAACAATGAAGAATGGGATGAAGATGATT
TCGGCAATCGCCAAGGAGGAAGATCAAGAGGTGATGAAGGCATGGATAAGAACGTCGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTACTCAAATCTATG
GCAATATCATTGATGACTTGGGATGTGTGGGATGCGGCGGTCCTCATAACACTGACGCATGCCCACTCAACACTGAAACTGTCGCGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTCCAGCAGAAGGACAGAGAAAACCTACATGACGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCCTGAATGCATATTGATGGA
GATTGTTGATGCTGTGTTTGTAGGCGGTATGCTAAAGAGCTCTTACAACCAGATTAAGGCGACGCTGGACATAATGACCAGCAACAATGAAGAATGGGATGAAGATGATT
TCGGCAATCGCCAAGGAGGAAGATCAAGAGGTGATGAAGGCATGGATAAGAACGTCGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTACTCAAATCTATG
GCAATATCATTGATGACTTGGGATGTGTGGGATGCGGCGGTCCTCATAACACTGACGCATGCCCACTCAACACTGAAACTGTCGCGTTCGTAA
Protein sequenceShow/hide protein sequence
MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMEIVDAVFVGGMLKSSYNQIKATLDIMTSNNEEWDEDDFGNRQGGRSRGDEGMDKNVVVALQGQMIAMNNLLKSM
AISLMTWDVWDAAVLITLTHAHSTLKLSRS