| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0063818.1 RNA polymerase sigma factor sigF [Cucumis melo var. makuwa] | 7.6e-204 | 94.13 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQ+RRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 2.6e-204 | 94.39 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQDRRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 2.6e-204 | 94.39 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQDRRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 7.9e-217 | 91.94 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEG
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV MFPEQA+PARYFSTSFLSQEQHHECRPQSQILKD R+SQMTL+RRLIERSV I+EG
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEG
Query: SRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEG
SR HDHLIWELKHQAVEWP LLSSW +QMEEYKI SIEKESYNA GEMLVKDEPENVIALAKKALSASKQAALLVDE+ELVGTSLDY+SLDDSLSKEG
Subjt: SRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEG
Query: RTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+STRLQDRRSKKRKVPKHVTTI E NFRGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLP
WAEALGITCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLP
Subjt: WAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLP
Query: ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
Subjt: ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 6.9e-213 | 91.16 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSH
MEAGLNLLSSSS FISRCHPRSFL PSC SSSSSSSSVSMF EQA PARYFSTSFLSQEQHHECRPQSQILKD RTSQ TLDRRLIERSVSI+EG+RS
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSH
Query: HDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVK
HDHLIWE KHQAVEWP LLSSW SLQMEEYKI S+EK+SYNA GEMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LDYTS DDSLSKEGRTV+
Subjt: HDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVK
Query: STRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEA
STRLQDRRSKKRKVPKHVTTIHET N +GKDSRRKT E+FDPNDPLRLFLWGPETKKLLT +EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEA
Subjt: STRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEA
Query: LGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVY
LG+TCQ LQSQL SFRISREKLINANLRMVVHIAKQYQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY
Subjt: LGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVY
Query: ALLGKVTEAKNYFVRAGNYKPSKEELAARV
LLGKVTEAKNYFVRAGNYKPSKEELAARV
Subjt: ALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KEQ6 RNA polymerase sigma factor | 3.8e-217 | 91.94 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEG
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV MFPEQA+PARYFSTSFLSQEQHHECRPQSQILKD R+SQMTL+RRLIERSV I+EG
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSS----SSSSSSSSVSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEG
Query: SRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEG
SR HDHLIWELKHQAVEWP LLSSW +QMEEYKI SIEKESYNA GEMLVKDEPENVIALAKKALSASKQAALLVDE+ELVGTSLDY+SLDDSLSKEG
Subjt: SRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEG
Query: RTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+STRLQDRRSKKRKVPKHVTTI E NFRGKDSRRKTSE FDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLP
WAEALGITCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF SYAYWWIRHSI KAIFQHSRTIRLP
Subjt: WAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLP
Query: ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
Subjt: ENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 1.3e-204 | 94.39 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQDRRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 1.3e-204 | 94.39 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQDRRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| A0A5A7V893 RNA polymerase sigma factor sigF | 3.7e-204 | 94.13 | Show/hide |
Query: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
V MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKE
Subjt: VSMFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKE
Query: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQ+RRSKKRKVPKHVTTIHET NFRGKDSRRKTSE
Subjt: SYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSE
Query: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: SFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| A0A5D3CAF4 RNA polymerase sigma factor | 4.8e-204 | 94.36 | Show/hide |
Query: MFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESY
MF EQA+PARYFSTSFLSQEQHHECRPQSQILKD RTSQMTLDRRLIERSV I+EGSRS HDHLIWELKHQAVEWP LLSSW SLQMEEYKI S EKESY
Subjt: MFPEQATPARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERSVSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESY
Query: NAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESF
NAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDY+SLDDSLSKEGRTV+STRLQ+RRSKKRKVPKHVTTIHET NFRGKDSRRKTSE F
Subjt: NAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESF
Query: DPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGR
DPNDPLRLFLWGPETKKLLTAQEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALGITCQ LQSQLHSFR SREKLINANLRMVVHIAKQY GR
Subjt: DPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGR
Query: GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNY VRAGNYKPSKEELAA V
Subjt: GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| O22056 RNA polymerase sigma factor sigB | 1.5e-40 | 32.89 | Show/hide |
Query: EKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRK-VPKHVTTIHETFNFRGKDSRR
EKE +G + V D N I K SAS + ++ +L + L + V+STR +R++++ K + K + I +R
Subjt: EKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRK-VPKHVTTIHETFNFRGKDSRR
Query: KTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIA
++ D NDPLR + KLLT +EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ +SL+ ++H + ++K+I +N+R+V+ IA
Subjt: KTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVELQW
K YQG G++L DL+QEG GL++ EKF G +F++YA+WWI+ ++ K++ SR IRLP ++ +V EA+ P EE+A L
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVELQW
Query: R
+
Subjt: R
|
|
| P26683 RNA polymerase sigma factor SigA | 6.2e-39 | 41.38 | Show/hide |
Query: SRRKT--SESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRM
SRR+T + D +RL+L +LL A EE EL +I DL+ L+ V+ RL + R+P EWAEA+ + + + +LH R +++K++ +NLR+
Subjt: SRRKT--SESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRM
Query: VVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAAR
VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F++YA WWIR +I +AI SRTIRLP ++Y + ++ + + KP++EE+A R
Subjt: VVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAAR
Query: VEL
+E+
Subjt: VEL
|
|
| P38023 RNA polymerase sigma factor SigA1 | 2.2e-36 | 35.86 | Show/hide |
Query: VKSTRLQDRRSKKRK----VPKHVTTIHETFNFRGKDSRRKTSESFD-------------PNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVK
+K + +RS ++K V + TTI T + D E D D +RL+L +LL A EE EL QI DL+ L+ ++
Subjt: VKSTRLQDRRSKKRK----VPKHVTTIHETFNFRGKDSRRKTSESFD-------------PNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVK
Query: ARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHS
L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F++YA WWIR +
Subjt: ARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHS
Query: INKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
I +AI SRTIRLP ++Y + ++ + + KP++EE+A R+E+
Subjt: INKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
|
|
| Q31ME3 RNA polymerase sigma factor SigA2 | 6.0e-34 | 40.61 | Show/hide |
Query: TSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAK
+S + P D +R +L +LLTA+EE Q+Q LM+L + + L+ + G EP+ EWA A+ + + L Q+ + ++ K+I ANLR+VV IAK
Subjt: TSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAK
Query: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
+YQ R + DL+QEG+LGL + VEKF P G +F++YAYWWIR +I +AI Q SRTIRLP ++ L K+ + + + + ELA +EL
Subjt: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
|
|
| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 2.0e-98 | 51.01 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATP----------ARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERS
MEA NL+SSS F ++ H SS SS SS V + + TP +R+F S LSQE E RP S L+D RTSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATP----------ARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERS
Query: VSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESEL-----VGTSLDY
VS E + +L H W L+S +S E K+P AV L E +V+ALA+KALSASKQAALLVD++E + SL
Subjt: VSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESEL-----VGTSLDY
Query: TSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ
TS SL ++G V+S R +RR+K R+ PK E + + +++K + D +D L+LFLWGPETK+LLTA+EE+ELI IQ L+ L+ VK +L+
Subjt: TSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ
Query: SQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKA
SQ G EPT+ EWAEA+GI+ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFA+YAYWWIR SI K+
Subjt: SQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKA
Query: IFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
IFQ+SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA V
Subjt: IFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.0e-41 | 32.89 | Show/hide |
Query: EKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRK-VPKHVTTIHETFNFRGKDSRR
EKE +G + V D N I K SAS + ++ +L + L + V+STR +R++++ K + K + I +R
Subjt: EKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESELVGTSLDYTSLDDSLSKEGRTVKSTRLQDRRSKKRK-VPKHVTTIHETFNFRGKDSRR
Query: KTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIA
++ D NDPLR + KLLT +EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ +SL+ ++H + ++K+I +N+R+V+ IA
Subjt: KTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVELQW
K YQG G++L DL+QEG GL++ EKF G +F++YA+WWI+ ++ K++ SR IRLP ++ +V EA+ P EE+A L
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVELQW
Query: R
+
Subjt: R
|
|
| AT1G64860.1 sigma factor A | 3.6e-26 | 33.69 | Show/hide |
Query: LRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH
+R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L I+ LQ+ L ++REKL +N+R+V+ IA++Y G +
Subjt: LRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH
Query: DLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
DL+Q G +GL++ +EKF G R ++Y YWWIR +++A+ +SRT+RLP +++ LG + AK G PS + +A + +
Subjt: DLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
|
|
| AT1G64860.2 sigma factor A | 3.6e-26 | 33.69 | Show/hide |
Query: LRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH
+R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L I+ LQ+ L ++REKL +N+R+V+ IA++Y G +
Subjt: LRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLH
Query: DLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
DL+Q G +GL++ +EKF G R ++Y YWWIR +++A+ +SRT+RLP +++ LG + AK G PS + +A + +
Subjt: DLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
|
|
| AT2G36990.1 RNApolymerase sigma-subunit F | 1.4e-99 | 51.01 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATP----------ARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERS
MEA NL+SSS F ++ H SS SS SS V + + TP +R+F S LSQE E RP S L+D RTSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLPPSCSSSSSSSSSSVSMFPEQATP----------ARYFSTSFLSQEQHHECRPQSQILKDGRTSQMTLDRRLIERS
Query: VSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESEL-----VGTSLDY
VS E + +L H W L+S +S E K+P AV L E +V+ALA+KALSASKQAALLVD++E + SL
Subjt: VSINEGSRSHHDHLIWELKHQAVEWPSLLSSWSSLQMEEYKIPSIEKESYNAVGEMLVKDEPENVIALAKKALSASKQAALLVDESEL-----VGTSLDY
Query: TSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ
TS SL ++G V+S R +RR+K R+ PK E + + +++K + D +D L+LFLWGPETK+LLTA+EE+ELI IQ L+ L+ VK +L+
Subjt: TSLDDSLSKEGRTVKSTRLQDRRSKKRKVPKHVTTIHETFNFRGKDSRRKTSESFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQ
Query: SQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKA
SQ G EPT+ EWAEA+GI+ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFA+YAYWWIR SI K+
Subjt: SQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKA
Query: IFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
IFQ+SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA V
Subjt: IFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARV
|
|
| AT5G13730.1 sigma factor 4 | 3.1e-25 | 35.36 | Show/hide |
Query: GPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
G L+ EE +L + +++ L+N+ ++ E V A G +S L + +REK+ R+VV IA YQG+GL+L DL+QEG
Subjt: GPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGITCQSLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
Query: SLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
S+GL++ E+F P G + ++Y YWWI+ +I +AI SR ++LP +++ L KV EA N R +PS EE+A + L
Subjt: SLGLMKSVEKFKPQAGCRFASYAYWWIRHSINKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVEL
|
|
