CuGenDBv2

Gene ID	PI0008163
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	chr01:13135730..13135960
RNA-Seq Expression	PI0008163
Synteny	PI0008163
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0008622 - epsilon DNA polymerase complex (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054183.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

5.7e-22

85.94

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY+++E IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

KAA0062449.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.3e-22

87.5

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.4e-22

85.94

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HR+ELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]

2.8e-21

77.94

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELPSRVA
        MKK ADR+RRELKF++GDEVYLKLRPYRQRSLARK+ EKL+PKFYGPY+V+E IG VAYRL+LP   A
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELPSRVA

TYJ98047.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

3.3e-22

87.5

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VHA7 Ty3/gypsy retrotransposon protein

3.6e-22

85.94

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HR+ELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

A0A5D3BFZ9 Transposon Tf2-6 polyprotein

1.6e-22

87.5

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

A0A5D3CH10 Transposon Ty3-G Gag-Pol polyprotein

2.3e-21

82.81

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKK AD  RRELKF+VGDEVYLKLRPYRQRSLARKR+EKLAPK+YGPY+++ETIG VAYRL+LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

A0A5D3CUI1 Transposon Ty3-G Gag-Pol polyprotein

2.7e-22

85.94

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY+++E IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein

1.6e-22

87.5

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Query:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP
        MKKQAD HRRELKF+VGDEVYLKLRPYRQRSLARKR EKLAPKFYGPY++VE IG VAYRL LP
Subjt:  MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAACAAGCTGACCGTCATAGGAGGGAGTTAAAGTTCGAGGTGGGGGATGAAGTCTATCTGAAATTAAGGCCTTACCGACAAAGATCTCTAGCTAGAAAGAGGAG
TGAGAAGTTGGCCCCGAAATTCTACGGACCCTATAAAGTGGTGGAAACTATAGGAGCAGTGGCTTATCGTTTAGAGCTACCGTCTAGGGTTGCACAATGTATTTCATGTA
TCTCAACTTAA

mRNA sequence

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Protein sequence

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MKKQADRHRRELKFEVGDEVYLKLRPYRQRSLARKRSEKLAPKFYGPYKVVETIGAVAYRLELPSRVAQCISCIST

PI0008163 (gene) of Melon (PI 482460) v1 genome