; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0008180 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008180
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:16342160..16342614
RNA-Seq ExpressionPI0008180
SyntenyPI0008180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-4368.55Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM E+ PG  +  T+ IDC+IKTLKR FQAI+EMR P CSGFGWNDE KCIIAEK+L+DNWV+SHPAAKGLLNKPFP+YD+L Y+F RDRA+G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVPTGYDGFSAYNRNDMEFP
        DVGSN P GYD F   + N+ EFP
Subjt:  DVGSNVPTGYDGFSAYNRNDMEFP

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-4264Show/hide
Query:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD
        MM  + PG NI  STID +IK +KR F A+++MR+P CSGFGWNDE KCIIAEK+++D+WVKSHPAAKGLLNK F HYD+L Y+FG+DRA GGR E+F D
Subjt:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD

Query:  VGSNVPTGYDGFSAYNRNDMEFPTM
        +GSN P GYD F+A    D +FP M
Subjt:  VGSNVPTGYDGFSAYNRNDMEFPTM

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]5.1e-4464.29Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM  + PG N+  T+ ID +IKTLKR++QAI+EMR P CSGFGWND+ KCIIAEK+ +DNWV+SHPAAKGLLNKPFP+YD   Y+FG+DRA+G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVPTGYDGFSAYNRNDMEFPTM
        DVGSNVP G++ F   ++NDME P+M
Subjt:  DVGSNVPTGYDGFSAYNRNDMEFPTM

XP_031743896.1 uncharacterized protein LOC116404722 [Cucumis sativus]6.6e-4465.08Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MMT + PG N+  T+ IDC IKTLKR++QAI+EM +P CSGFGWND+ KCI+AEK+L+DNWV+SH AAKGLLNKPFP+YD L YIFG+DRA G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVPTGYDGFSAYNRNDMEFPTM
        DVGSNVP G++ F   + NDM+ P+M
Subjt:  DVGSNVPTGYDGFSAYNRNDMEFPTM

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]1.0e-4464.29Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM  + PG N+  T+ IDC+IKTLKR++Q I+EMR P C GFGWND++KCI+AEK+L+DNWV+SHPAAKGLLNK FP+YD+L Y+FG+DRA+G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVPTGYDGFSAYNRNDMEFPTM
        DVGSNVP G++ F   + NDMEFP+M
Subjt:  DVGSNVPTGYDGFSAYNRNDMEFPTM

TrEMBL top hitse value%identityAlignment
A0A1S3CTN6 uncharacterized protein LOC1035043322.3e-4263.2Show/hide
Query:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD
        MM  + PG NI  STID +IK +KR F A++EMR P CSGFGWNDE KCI+AEK+++D+WVKSHP AKGLLNK F HYD+L Y+FG+DRA GGR E+F D
Subjt:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD

Query:  VGSNVPTGYDGFSAYNRNDMEFPTM
        +GSN P GYD F+A    D +FP M
Subjt:  VGSNVPTGYDGFSAYNRNDMEFPTM

A0A5A7TYW0 Retrotransposon protein1.6e-4368.55Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM E+ PG  +  T+ IDC+IKTLKR FQAI+EMR P CSGFGWNDE KCIIAEK+L+DNWV+SHPAAKGLLNKPFP+YD+L Y+F RDRA+G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVPTGYDGFSAYNRNDMEFP
        DVGSN P GYD F   + N+ EFP
Subjt:  DVGSNVPTGYDGFSAYNRNDMEFP

A0A5A7U4M2 Retrotransposon protein1.0e-4264Show/hide
Query:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD
        MM  + PG NI  STID +IK +KR F A+++MR+P CSGFGWNDE KCIIAEK+++D+WVKSHPAAKGLLNK F HYD+L Y+FG+DRA GGR E+F D
Subjt:  MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVD

Query:  VGSNVPTGYDGFSAYNRNDMEFPTM
        +GSN P GYD F+A    D +FP M
Subjt:  VGSNVPTGYDGFSAYNRNDMEFPTM

A0A5A7VES2 Retrotransposon protein3.0e-4268Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM E+ PG  +  T+ IDC+IKTLKR FQAI+EMR P CSGFGWNDE KCIIAEK+L+DNWV+SHPAAKGLLNKPFP+YD+L Y+FGRDRA G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSNVP-TGYDGFSAYNRNDMEFP
        DVGSN P  GYD F   + N+ +FP
Subjt:  DVGSNVP-TGYDGFSAYNRNDMEFP

A0A5A7VKT2 Retrotransposon protein1.3e-4266.93Show/hide
Query:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV
        MM E+ PG  +  T+ IDC+IKTLKR FQAI+EMR P CSGFGWNDE+KCIIAEK+L+DNWV+SHPAAKGLLNKPFP+YD+L Y+FGRDRA G   ETF 
Subjt:  MMTERKPGYNI-TTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFV

Query:  DVGSN-VPTGYDGFSAYNRNDMEFPTM
        DVGSN +  GYD F   + N+ +FP M
Subjt:  DVGSN-VPTGYDGFSAYNRNDMEFPTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein5.0e-0533.96Show/hide
Query:  GFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIG
        GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC I+G   A G
Subjt:  GFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIG

AT2G24960.2 unknown protein2.1e-0830.67Show/hide
Query:  KTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRT
        K L+R +  I  +     +GF W+     +IA+ D+++ ++++HP A+    K  P Y +LC+IFG++ + G  T
Subjt:  KTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRT

AT4G02210.1 unknown protein7.4e-0928.57Show/hide
Query:  NITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFG
        N     +  + K+L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  NITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFG

AT4G02210.2 unknown protein7.4e-0928.57Show/hide
Query:  NITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFG
        N     +  + K+L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  NITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGACCGAGAGGAAGCCGGGATATAACATAACGACTTCGACCATTGATTGTCAGATAAAGACACTTAAAAGAGCGTTCCAAGCCATATCTGAAATGAGAAACCCATT
GTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATCATTGCGGAGAAAGACTTGTATGACAATTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAAC
CCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAATAGGAGGTCGCACTGAAACCTTTGTCGATGTTGGGTCGAATGTGCCTACAGGGTACGAT
GGATTTTCCGCTTATAACAGGAACGATATGGAGTTCCCGACGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGACCGAGAGGAAGCCGGGATATAACATAACGACTTCGACCATTGATTGTCAGATAAAGACACTTAAAAGAGCGTTCCAAGCCATATCTGAAATGAGAAACCCATT
GTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATCATTGCGGAGAAAGACTTGTATGACAATTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAAC
CCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAATAGGAGGTCGCACTGAAACCTTTGTCGATGTTGGGTCGAATGTGCCTACAGGGTACGAT
GGATTTTCCGCTTATAACAGGAACGATATGGAGTTCCCGACGATGTAA
Protein sequenceShow/hide protein sequence
MMTERKPGYNITTSTIDCQIKTLKRAFQAISEMRNPLCSGFGWNDELKCIIAEKDLYDNWVKSHPAAKGLLNKPFPHYDDLCYIFGRDRAIGGRTETFVDVGSNVPTGYD
GFSAYNRNDMEFPTM