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PI0008201 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008201
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:8011042..8013320
RNA-Seq ExpressionPI0008201
SyntenyPI0008201
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035161.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1782.14Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+ LVECLLQLVEE GWRADNGTF+ GYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-1782.14Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MAS NSKAT+HRW TIED+VLVECLLQLVEEGGWRADNGTF+  YL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-1985.71Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+VLV CLLQLVEEGGWRADNGTF+PGYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]5.5e-1985.71Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+VLVECLLQLVEEGGWRADNGTF+ GYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]9.4e-1983.93Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MAST SKAT+HRW TIED+ LVECLLQLVEEGGWRADNGTF+PGYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like4.6e-1983.93Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MAST SKAT+HRW TIED+ LVECLLQLVEEGGWRADNGTF+PGYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

A0A5A7T0P1 Retrotransposon protein8.6e-1882.14Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+ LVECLLQLVEE GWRADNGTF+ GYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

A0A5A7VG45 Retrotransposon protein1.1e-1782.14Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MAS NSKAT+HRW TIED+VLVECLLQLVEEGGWRADNGTF+  YL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

A0A5D3C542 Retrotransposon protein1.2e-1985.71Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+VLV CLLQLVEEGGWRADNGTF+PGYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

A0A5D3C7T4 Uncharacterized protein2.7e-1985.71Show/hide
Query:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM
        MASTNSKAT+HRW TIED+VLVECLLQLVEEGGWRADNGTF+ GYL QYTAI +MM
Subjt:  MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGACAAATTCAAAAGCCACTGAGCATAGATGGAGAACCATTGAAGATAAGGTATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGA
TAATGGGACATTCAGACCTGGATATTTGGTACAATACACTGCCATAGGAAAGATGATGGACCTGCGCGTAGTGGGTTTGACTAGAATGAGGAACGAAAGTGCATTGAGGC
AGAGAAATTTGTGTTCGATGATTGGGTTAAGGGACACCCCAATGCTCGAGATTATACAGCAACAAGGAGAACCTCACAGCCCGAGGTCAAGGCACCAAAGCATGGAATGC
ACAAAACCACCAAACACAACAAATAGAGAAACCAAACAAGAAACCAGGGAAAAAAACCCCACAACCGGGGAAACAAACCAAAAGGAAAACCAGACGACAAAAAGAAAAAA
CCAAACAACAAAACGGAAAGCACTAGATAAGATCATAAACATCTTCCTGCCAAGAGACAGCACGAGCACGAACAGTAGACCAGATACACTGAATCAGAATATCGGGCTCA
CGAGTCGCACCACCATGGAGACGACGATTCCGCTCATTCCAGATAAATTTGAAGATGAAAGGATGGAAGATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGACAAATTCAAAAGCCACTGAGCATAGATGGAGAACCATTGAAGATAAGGTATTAGTTGAGTGCTTACTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGA
TAATGGGACATTCAGACCTGGATATTTGGTACAATACACTGCCATAGGAAAGATGATGGACCTGCGCGTAGTGGGTTTGACTAGAATGAGGAACGAAAGTGCATTGAGGC
AGAGAAATTTGTGTTCGATGATTGGGTTAAGGGACACCCCAATGCTCGAGATTATACAGCAACAAGGAGAACCTCACAGCCCGAGGTCAAGGCACCAAAGCATGGAATGC
ACAAAACCACCAAACACAACAAATAGAGAAACCAAACAAGAAACCAGGGAAAAAAACCCCACAACCGGGGAAACAAACCAAAAGGAAAACCAGACGACAAAAAGAAAAAA
CCAAACAACAAAACGGAAAGCACTAGATAAGATCATAAACATCTTCCTGCCAAGAGACAGCACGAGCACGAACAGTAGACCAGATACACTGAATCAGAATATCGGGCTCA
CGAGTCGCACCACCATGGAGACGACGATTCCGCTCATTCCAGATAAATTTGAAGATGAAAGGATGGAAGATGGATAA
Protein sequenceShow/hide protein sequence
MASTNSKATEHRWRTIEDKVLVECLLQLVEEGGWRADNGTFRPGYLVQYTAIGKMMDLRVVGLTRMRNESALRQRNLCSMIGLRDTPMLEIIQQQGEPHSPRSRHQSMEC
TKPPNTTNRETKQETREKNPTTGETNQKENQTTKRKNQTTKRKALDKIINIFLPRDSTSTNSRPDTLNQNIGLTSRTTMETTIPLIPDKFEDERMEDG