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PI0008243 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0008243
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:19761151..19761828
RNA-Seq ExpressionPI0008243
SyntenyPI0008243
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]3.9e-2638.07Show/hide
Query:  VVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKK
        VV  FY A +N EE   E++ + V F  +AIN LY L N+    G     +P  +   +ALE I WPGT W+  PT KYQL+P+ L  E SVW  FIKK 
Subjt:  VVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKK

Query:  ISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIPGSLCNQMSLNRMITFHAHKEMKR
        I   RHDSTI++E +MLLY      + N   +    +++W++ P G  PF  + + L  K  P L     + +   +C   +L+R IT H +K   R
Subjt:  ISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIPGSLCNQMSLNRMITFHAHKEMKR

KAA0049609.1 transposase [Cucumis melo var. makuwa]1.7e-2647.55Show/hide
Query:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML
        +    V F  E IN+LYDL ND+   PGQ  +V   +  A + +++I WP      TPT + QL+PHQLTIEA+VW FFIKKKI    HDSTI  E  ++
Subjt:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML

Query:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK
        LYCI  KK  NL  ++  + LSWMR PK   PF + V+ LC K
Subjt:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-3648.02Show/hide
Query:  MGVVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTG-KYQLYPHQLTIEASVWFFFI
        M VV KFY  K N  +  + I      FN E IN+LY+  ND E  GQE V   TK +A EAL+V+AWPG   E+ P   +YQLYPH LT +A+VW FF 
Subjt:  MGVVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTG-KYQLYPHQLTIEASVWFFFI

Query:  KKKISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIP
        K KI    +DSTI+++  ++LYCIM KK +NLD +I  +IL+WM  PK  MPF S++E LC K +P L       IP
Subjt:  KKKISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIP

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]1.7e-2647.55Show/hide
Query:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML
        +    V F  E IN+LYDL ND+   PGQ  +V   +  A + +++I WP      TPT + QL+PHQLTIEA+VW FFIKKKI    HDSTI  E  ++
Subjt:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML

Query:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK
        LYCI  KK  NL  ++  + LSWMR PK   PF + V+ LC K
Subjt:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK

TYK22187.1 hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa]6.6e-2646.58Show/hide
Query:  FYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVE-MPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISL
        FYAAK ++ E  V +  + VSF  E IN+LY L ND++  P Q  +  PTK  +   +++IAW G  W  T T   QLYPHQLT EA+VW  FIKKKI  
Subjt:  FYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVE-MPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISL

Query:  MRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMP
        M +DST+ +E M+LLYC M K+  NL  ++  + L  MR  KG  P
Subjt:  MRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMP

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase8.4e-2747.55Show/hide
Query:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML
        +    V F  E IN+LYDL ND+   PGQ  +V   +  A + +++I WP      TPT + QL+PHQLTIEA+VW FFIKKKI    HDSTI  E  ++
Subjt:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML

Query:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK
        LYCI  KK  NL  ++  + LSWMR PK   PF + V+ LC K
Subjt:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK

A0A5A7V6M5 Gag/pol protein3.4e-3648.02Show/hide
Query:  MGVVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTG-KYQLYPHQLTIEASVWFFFI
        M VV KFY  K N  +  + I      FN E IN+LY+  ND E  GQE V   TK +A EAL+V+AWPG   E+ P   +YQLYPH LT +A+VW FF 
Subjt:  MGVVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTG-KYQLYPHQLTIEASVWFFFI

Query:  KKKISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIP
        K KI    +DSTI+++  ++LYCIM KK +NLD +I  +IL+WM  PK  MPF S++E LC K +P L       IP
Subjt:  KKKISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIP

A0A5D3CVL7 Uncharacterized protein8.4e-2747.55Show/hide
Query:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML
        +    V F  E IN+LYDL ND+   PGQ  +V   +  A + +++I WP      TPT + QL+PHQLTIEA+VW FFIKKKI    HDSTI  E  ++
Subjt:  IRGRTVSFNAEAINDLYDLSNDV-EMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDSTINLESMML

Query:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK
        LYCI  KK  NL  ++  + LSWMR PK   PF + V+ LC K
Subjt:  LYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEK

A0A5D3CW17 Uncharacterized protein1.9e-2638.07Show/hide
Query:  VVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKK
        VV  FY A +N EE   E++ + V F  +AIN LY L N+    G     +P  +   +ALE I WPGT W+  PT KYQL+P+ L  E SVW  FIKK 
Subjt:  VVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKK

Query:  ISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIPGSLCNQMSLNRMITFHAHKEMKR
        I   RHDSTI++E +MLLY      + N   +    +++W++ P G  PF  + + L  K  P L     + +   +C   +L+R IT H +K   R
Subjt:  ISLMRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIPGSLCNQMSLNRMITFHAHKEMKR

A0A5D3DES7 Uncharacterized protein3.2e-2646.58Show/hide
Query:  FYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVE-MPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISL
        FYAAK ++ E  V +  + VSF  E IN+LY L ND++  P Q  +  PTK  +   +++IAW G  W  T T   QLYPHQLT EA+VW  FIKKKI  
Subjt:  FYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVE-MPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISL

Query:  MRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMP
        M +DST+ +E M+LLYC M K+  NL  ++  + L  MR  KG  P
Subjt:  MRHDSTINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGGTGGAAAAGTTTTATGCTGCTAAGCTCAATGCTGAGGAGTTTAGCGTAGAAATCAGAGGAAGGACGGTGAGCTTCAACGCGGAGGCCATCAATGATTTATA
TGATTTGTCCAACGACGTTGAAATGCCTGGGCAAGAATACGTGGTAAGTCCAACCAAGAAAATGGCCTGTGAAGCGTTGGAAGTCATCGCCTGGCCTGGGACCGCATGGG
AAATTACGCCGACAGGGAAGTATCAGCTTTATCCACACCAGCTAACCATAGAGGCAAGTGTGTGGTTCTTCTTCATAAAAAAGAAGATATCTCTCATGCGCCATGATAGC
ACCATTAACTTAGAGTCAATGATGTTGCTTTACTGCATAATGACGAAGAAGCGCGTCAACCTCGACAATCTAATAGCTACATCCATCCTATCTTGGATGCGAGCTCCCAA
GGGCACCATGCCCTTCTCATCTATAGTTGAAGCTCTCTGTGAGAAGGTCGTGCCTTTTCTATGCGCCATGAACACAATGCCAATTCCAGGCAGCCTGTGTAATCAGATGT
CTTTGAATCGCATGATCACCTTCCATGCCCACAAAGAAATGAAAAGGCGATCAAAGACATTGGATGACACAACAAATGAAGGCGCGACCCAGGCAGATTGCAAATGCAAA
GCCCCAGCCGTCGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGGTGGAAAAGTTTTATGCTGCTAAGCTCAATGCTGAGGAGTTTAGCGTAGAAATCAGAGGAAGGACGGTGAGCTTCAACGCGGAGGCCATCAATGATTTATA
TGATTTGTCCAACGACGTTGAAATGCCTGGGCAAGAATACGTGGTAAGTCCAACCAAGAAAATGGCCTGTGAAGCGTTGGAAGTCATCGCCTGGCCTGGGACCGCATGGG
AAATTACGCCGACAGGGAAGTATCAGCTTTATCCACACCAGCTAACCATAGAGGCAAGTGTGTGGTTCTTCTTCATAAAAAAGAAGATATCTCTCATGCGCCATGATAGC
ACCATTAACTTAGAGTCAATGATGTTGCTTTACTGCATAATGACGAAGAAGCGCGTCAACCTCGACAATCTAATAGCTACATCCATCCTATCTTGGATGCGAGCTCCCAA
GGGCACCATGCCCTTCTCATCTATAGTTGAAGCTCTCTGTGAGAAGGTCGTGCCTTTTCTATGCGCCATGAACACAATGCCAATTCCAGGCAGCCTGTGTAATCAGATGT
CTTTGAATCGCATGATCACCTTCCATGCCCACAAAGAAATGAAAAGGCGATCAAAGACATTGGATGACACAACAAATGAAGGCGCGACCCAGGCAGATTGCAAATGCAAA
GCCCCAGCCGTCGCATGA
Protein sequenceShow/hide protein sequence
MGVVEKFYAAKLNAEEFSVEIRGRTVSFNAEAINDLYDLSNDVEMPGQEYVVSPTKKMACEALEVIAWPGTAWEITPTGKYQLYPHQLTIEASVWFFFIKKKISLMRHDS
TINLESMMLLYCIMTKKRVNLDNLIATSILSWMRAPKGTMPFSSIVEALCEKVVPFLCAMNTMPIPGSLCNQMSLNRMITFHAHKEMKRRSKTLDDTTNEGATQADCKCK
APAVA