CuGenDBv2

Gene ID	PI0008268
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	tig00003741:135251..136357
RNA-Seq Expression	PI0008268
Synteny	PI0008268
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR020592 - Ribosomal protein S16, conserved site IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QJS52337.1 ribosomal protein S16 [Indofevillea khasiana]

1.4e-23

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009004027.1 ribosomal protein S16 [Cucumis hystrix]

8.4e-24

74.39

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Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

1.4e-23

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009752648.1 ribosomal protein S16 [Ampelosycios humblotii]

1.4e-23

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_010131076.1 ribosomal protein S16 [Benincasa hispida]

1.4e-23

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A218KG12 30S ribosomal protein S16, chloroplastic

7.0e-24

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A343UM14 30S ribosomal protein S16, chloroplastic

4.1e-24

74.39

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Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A515BLF3 30S ribosomal protein S16, chloroplastic

4.1e-24

74.39

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Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6H0ETM9 30S ribosomal protein S16, chloroplastic

7.0e-24

72.62

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

W8E1Y8 Ribosomal protein S16

4.1e-24

74.39

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Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

5.1e-24

69.05

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q09X35 30S ribosomal protein S16, chloroplastic

9.7e-23

66.27

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLN
        MVKLRLKRCGR+Q                      +GFYDPIKNQTYLNVP ILYFLEKGAQPTGTVHDI KKAGVF EL LN
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLN

Q0ZJ38 30S ribosomal protein S16, chloroplastic

3.3e-23

67.86

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic

5.1e-24

69.05

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic

2.5e-26

71.76

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Query:  MVKLRLKRCGRKQ-----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                       +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

7.9e-04

43.48

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Query:  LGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        LGFYDP++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  LGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

4.3e-18

58.23

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Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        MVKLRLKRCGRKQ                      +GFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE

Sequences

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CDS sequence

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ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAA
GGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

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ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAA
GGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Protein sequence

Show/hide protein sequence

MVKLRLKRCGRKQLGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

PI0008268 (gene) of Melon (PI 482460) v1 genome