CuGenDBv2

Gene ID	PI0008281
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:10334076..10334842
RNA-Seq Expression	PI0008281
Synteny	PI0008281
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

2.1e-75

62.45

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++D+W  SH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]

2.7e-75

61.57

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        + EK L+D+WVKSH  AKGLLNKSF HY++L YVF +DRATGGRAE+F ++GSN   GYD F+A    D  F  +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G    +  I+ +A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

KAA0048377.1 retrotransposon protein [Cucumis melo var. makuwa]

3.5e-75

62.45

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++D+W  SH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

KAA0054347.1 retrotransposon protein [Cucumis melo var. makuwa]

9.2e-76

65.16

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH+WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N+ ASTID RIK LKR F AI+E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++DNWVKSHLAAKGLL K F HY++L YVF +DRATGG AE+FA+VGSN   GY+ F A    D  F  +YSQ LNMSPD+++GTR  R+SEGR 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIR
         SSGSKRKRGGQA   A   R
Subjt:  GSSGSKRKRGGQAFKTAKIIR

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-77

63.32

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        + EK L+D+WVKSH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U098 Retrotransposon protein

1.3e-75

61.57

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        + EK L+D+WVKSH  AKGLLNKSF HY++L YVF +DRATGGRAE+F ++GSN   GYD F+A    D  F  +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G    +  I+ +A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

A0A5A7UIE9 Retrotransposon protein

4.5e-76

65.16

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH+WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N+ ASTID RIK LKR F AI+E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++DNWVKSHLAAKGLL K F HY++L YVF +DRATGG AE+FA+VGSN   GY+ F A    D  F  +YSQ LNMSPD+++GTR  R+SEGR 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIR
         SSGSKRKRGGQA   A   R
Subjt:  GSSGSKRKRGGQAFKTAKIIR

A0A5A7UME4 Retrotransposon protein

1.7e-75

62.45

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++D+W  SH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

A0A5D3C1M0 Retrotransposon protein

6.2e-78

63.32

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        + EK L+D+WVKSH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

A0A5D3DPR5 Retrotransposon protein

9.9e-76

62.45

Show/hide

Query:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI
        M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G NI ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI
Subjt:  METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCI

Query:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV
        +AEK ++D+W  SH AAKGLLNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GLNMSPDD++ TR  R+SE R 
Subjt:  IAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRV

Query:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND
         SSGSKRKR G A  +  I+R+A+EY N+
Subjt:  GSSGSKRKRGGQAFKTAKIIRSAMEYAND

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

1.2e-09

26.24

Show/hide

Query:  ETSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCII
        E +S   +  WT   D  L++ LVE V+ G       TF  S  N +      +  G       +  R K L+R +  I  L     +GFSW+     +I
Subjt:  ETSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCII

Query:  AEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATG
        A+ ++++ ++++H  A+    K+ P Y +LC++F ++ + G
Subjt:  AEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATG

AT4G02210.1 unknown protein

3.9e-08

30.14

Show/hide

Query:  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLC
        N     +  R K+L+R F AI  +      GF+W++E + + A+ N++ +++K+H  A+  + +  P+Y DLC
Subjt:  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLC

AT4G02210.2 unknown protein

3.9e-08

30.14

Show/hide

Query:  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLC
        N     +  R K+L+R F AI  +      GF+W++E + + A+ N++ +++K+H  A+  + +  P+Y DLC
Subjt:  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAACTTCTTCAAGTGCCCCCAAGCACCACTGGACGAAAGAGGAGGATGTCACCCTCGTTGAATGTCTGGTGGAATTGGTATCAACCGGCGGGTGGAGGTCGAACAA
CGGGACGTTTAGACCCAGTTACCATAATCATCTGCAGAAAATGATGGCCGAGAGGATGCTGGGACATAACATAACGGCTTCGACCATTGATTATCGAATAAAGACTCTAA
AAAGAGCGTTCCAAGCCATATCTGAACTAAGGGGCCCATCGTGCAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTACGACAATTGG
GTGAAGAGTCATCTAGCCGCGAAGGGTCTCCTAAACAAATCATTTCCCCATTACAACGACCTTTGCTATGTCTTTCGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAAC
CTTTGCCAATGTTGGGTCGAACGTGTCTGTAGGGTACGATGAATTTTCCGCTTATGACGGAGACGATATGGAATTCCCCACGATATACAGTCAGGGACTGAACATGTCAC
CTGACGACATAATAGGCACACGACCCGGTCGATTGTCTGAGGGTAGGGTGGGTTCGAGCGGTTCGAAGAGGAAACGGGGAGGGCAGGCATTCAAGACGGCAAAAATTATT
CGTAGTGCCATGGAATATGCGAATGACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNW
VKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKII
RSAMEYAND

PI0008281 (gene) of Melon (PI 482460) v1 genome